View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_101 (Length: 206)
Name: NF18674_high_101
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_101 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 15283166 - 15283327
Alignment:
| Q |
27 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccatta |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15283166 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgacaaatcaagggactctaattgtttcatgttgccaatttcttttggtatggttcccatta |
15283265 |
T |
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| Q |
127 |
attgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaaggtatt |
188 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
15283266 |
attgattttgtgacaagtttaaggatttcaatgcagtgagtctaaatacttctataggtatt |
15283327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 15463535 - 15463696
Alignment:
| Q |
27 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccatta |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15463535 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgacaaatcaagggactctaattgtttcatgttgccaatttcttttggtatggttcccatta |
15463634 |
T |
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| Q |
127 |
attgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaaggtatt |
188 |
Q |
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| T |
15463635 |
attgattttgtgacaagtttaaggatttcaatgcagtgagtctaaatacttctataggtatt |
15463696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 15445412 - 15445583
Alignment:
| Q |
16 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtat |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15445412 |
aagaaagagacaacatggtttgaggaatttctcctgaaagtgtgttgtttgacagatcaagggactctaactgtttcatgttgccaatttcttttggtat |
15445511 |
T |
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| Q |
116 |
ggttcccattaattgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaaggtatt |
188 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
15445512 |
ggttcccattaattgattttgt-acaagttcaaggatttcaatgcagtgagtctaaatacttctgaaggtatt |
15445583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 15312540 - 15312697
Alignment:
| Q |
27 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccatta |
126 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
15312540 |
gacatggtttgaggaatttctcctgaaagtgagttgtttgacagatcaagggactctaactgtttcatgttgccaatttcatttggtatggttcccatga |
15312639 |
T |
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| Q |
127 |
attgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaagg |
184 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
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| T |
15312640 |
attgattttgtgacaagttcaaggattgtaatgcagtgagtctgaatatttctaaagg |
15312697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 15492909 - 15493066
Alignment:
| Q |
27 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccatta |
126 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
15492909 |
gacatggtttgaggaatttctcctgaaagtgagttgtttgacagatcaagggactctaactgtttcatgttgccaatttcatttggtatggttcccatga |
15493008 |
T |
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| Q |
127 |
attgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaagg |
184 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
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| T |
15493009 |
attgattttgtgacaagttcaaggattgtaatgcagtgagtctgaatatttctaaagg |
15493066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 15301664 - 15301836
Alignment:
| Q |
16 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
15301664 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgacagatcaagggactctaactgtttcatgtttccaatatcatttggtat |
15301763 |
T |
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| Q |
116 |
ggttcccattaattgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaaggtatt |
188 |
Q |
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||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | || |||||||| |
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| T |
15301764 |
ggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtctaaatactcctgaaggtatt |
15301836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 15482033 - 15482205
Alignment:
| Q |
16 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtat |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
15482033 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgacagatcaagggactctaactgtttcatgtttccaatatcatttggtat |
15482132 |
T |
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| Q |
116 |
ggttcccattaattgattttgtgacaagtttaaggattttaatgcagtgagtctaaatatttctaaaggtatt |
188 |
Q |
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||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | || |||||||| |
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| T |
15482133 |
ggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtctaaatactcctgaaggtatt |
15482205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 15114132 - 15114025
Alignment:
| Q |
16 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114132 |
aagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtat |
15114033 |
T |
|
| Q |
116 |
ggttccca |
123 |
Q |
| |
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|||||||| |
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| T |
15114032 |
ggttccca |
15114025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 18051170 - 18051296
Alignment:
| Q |
27 |
gacatggtttgaggaatttctcctgaaagtgtgttgtttgagaaatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccatta |
126 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||| || ||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
18051170 |
gacatgcttttaggaatttctccagaaagtgtgttattcgagaaattaagggattccaattgtttcatgttgccaatttcttttggtatggttcccatta |
18051269 |
T |
|
| Q |
127 |
attgattttgtgacaagtttaaggatt |
153 |
Q |
| |
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||||||| || ||||| |||||||||| |
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| T |
18051270 |
attgattatgcgacaaatttaaggatt |
18051296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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