View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_2 (Length: 774)
Name: NF18674_high_2
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 704; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 18 - 765
Target Start/End: Original strand, 45141627 - 45142374
Alignment:
| Q |
18 |
tttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141627 |
tttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcac |
45141726 |
T |
|
| Q |
118 |
tcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45141727 |
tcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcg |
45141826 |
T |
|
| Q |
218 |
tggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctca |
317 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141827 |
tggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacggaattagagtcaattcaatctca |
45141926 |
T |
|
| Q |
318 |
ccgaatggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaatta |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141927 |
ccgtatggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtaaagttgaagctaatatgaaagattctgctaatttgaaaggaatta |
45142026 |
T |
|
| Q |
418 |
cactaaaggctacgcatattgcagaagctgctctctttcttgcatcggaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttctc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45142027 |
cactaaaggctacgcatattgcagaagctgctctctttcttgcatcggaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttttc |
45142126 |
T |
|
| Q |
518 |
tgttattaatagttgtgttcctactactattaaaaaataagcggtccaatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatt |
617 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45142127 |
tgttattaatagttgtgtgcctactactattaaaaaataagtggtccaatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatt |
45142226 |
T |
|
| Q |
618 |
tggaatgcgttcctactattagaaaggaaagccttgtaattcttgatcatagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaac |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142227 |
tggaatgcgttcctactattagaaaggaaagccttgtaattcttgatcatagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaac |
45142326 |
T |
|
| Q |
718 |
atcgtgttttcatctttactttctgtaatcttttattttgtgtctgtg |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
45142327 |
atcgtgttttcatctttactttctgtaatcttttattttgtgtgtgtg |
45142374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 75 - 520
Target Start/End: Original strand, 45152329 - 45152774
Alignment:
| Q |
75 |
aatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatcca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||| |||||||| |||||||||| |
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| T |
45152329 |
aatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatcca |
45152428 |
T |
|
| Q |
175 |
taatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtg |
274 |
Q |
| |
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||||||| || || ||||| |||| || ||||||||| | | || ||||||||| | |||||||||||||| |||| ||||| || |||||||| |
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| T |
45152429 |
taatttgcacggctagtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacgtg |
45152528 |
T |
|
| Q |
275 |
cggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtgaa |
374 |
Q |
| |
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| |||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||||||||||||| | ||| |||||||| |
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|
| T |
45152529 |
cagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaacaaggatgtgagtgaa |
45152628 |
T |
|
| Q |
375 |
gttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctctttcttgcatcggaagaatcgg |
474 |
Q |
| |
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|||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| || || ||||||| |
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| T |
45152629 |
gttgaagctattgggaatgattctgctaatttgaaaggaattacactaaaggctggtcatattgcagaagctgctatgtttcttgcttccgatgaatcgg |
45152728 |
T |
|
| Q |
475 |
cttatattagtggacacaatttggtggtcgatggaggcttctctgt |
520 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||| |||| |
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|
| T |
45152729 |
cttatattagtggacaaaacttggtggtcgatggaggcttcactgt |
45152774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 54 - 526
Target Start/End: Original strand, 38256127 - 38256599
Alignment:
| Q |
54 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
153 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
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| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
|
| Q |
154 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctctt |
253 |
Q |
| |
|
| |||||||| || ||||| |||||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| | |
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|
| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttat |
38256326 |
T |
|
| Q |
254 |
aggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagca |
353 |
Q |
| |
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||| ||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||| || |||||||||||||||||| |
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|
| T |
38256327 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagca |
38256426 |
T |
|
| Q |
354 |
ctgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgcagaagctgctctct |
453 |
Q |
| |
|
||| | |||| | |||||||||||||||| | |||| |||||||||| | ||||||||| | |||||| | ||||||||||| ||||| | | |
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|
| T |
38256427 |
ctggacatggtgccgagtgaagttgaagctgttggccttgattatgctaatttgcagggaattacattgaaggctgctcatattgcagagactgctttgt |
38256526 |
T |
|
| Q |
454 |
ttcttgcatcggaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttctctgttattaa |
526 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||| ||||| || |||||||||||||| || ||||| |
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|
| T |
38256527 |
ttcttgcatctgatgaatctgcttatattagtggacacaacttggtcgttgatggaggcttctcagtcattaa |
38256599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 670 - 721
Target Start/End: Complemental strand, 34530995 - 34530943
Alignment:
| Q |
670 |
tgatgagatcgacctcagtgaggatgtaggattcaaa-ttgatccaaacatcg |
721 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
34530995 |
tgatgagatcgacctcaacgaggatgtaggattcaaagttgatccaaatatcg |
34530943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 520
Target Start/End: Complemental strand, 12700778 - 12700681
Alignment:
| Q |
423 |
aaggctacgcatattgcagaagctgctctctttcttgcatcggaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttctctgt |
520 |
Q |
| |
|
||||||| ||||||||||||||| ||| | |||||||| || || ||| | | ||| |||||||| || |||||||| || ||||| || |||||||| |
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|
| T |
12700778 |
aaggctaagcatattgcagaagcagctttgtttcttgcttctgatgaagctgtttacattagtggtcataatttggtagttgatggtggtttctctgt |
12700681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Complemental strand, 29361487 - 29361452
Alignment:
| Q |
659 |
cttgatcatagtgatgagatcgacctcagtgaggat |
694 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29361487 |
cttgatcatagtgatgggatcgacctcagtgaggat |
29361452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Original strand, 30270623 - 30270658
Alignment:
| Q |
659 |
cttgatcatagtgatgagatcgacctcagtgaggat |
694 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
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|
| T |
30270623 |
cttgatcatagtgatgggatcgacctcagtgaggat |
30270658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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