View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_20 (Length: 488)
Name: NF18674_high_20
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 15467195 - 15467658
Alignment:
| Q |
11 |
caaaggcaattcatcaacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15467195 |
caaaggcaattcatcaacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataa |
15467294 |
T |
|
| Q |
111 |
ataccatgttgtttagcaacatcaagtgcccaaggtagaaaagaatcatagacaatgcatgtgattggtgttgaagttttttggtatttttgaatgatgt |
210 |
Q |
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| T |
15467295 |
ataccatgttgtttagcaacatcaagtgcccaaggtagaaaagaatcatagacaatgcatgtgattggtgttgaagttttttggtatttttgaatgatgt |
15467394 |
T |
|
| Q |
211 |
ttgagagtgaattggaaccattggttttgaatgaagtgagaaaaagttcaacattgttggcttgtgaaaaaccggattcgtcgaacccatcagagattgg |
310 |
Q |
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| T |
15467395 |
ttgagagtgaattggaaccattggttttgaatgaagtgagaaagagttcaacattgttggcttgtgtaaaaccggattcgtcgaacccatcagagattgg |
15467494 |
T |
|
| Q |
311 |
ttcgacggatacgtttggtgcggttatggattgaacagtgtaatgtgttgttgcaaatgttgttttgatgccttttgaaaccaatcgttttgagaattgg |
410 |
Q |
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| T |
15467495 |
ttcgacggatacgtttggtgcggttatggattgaacagtgtaatgtgttgttgcaaatgttgttttgatgccttttgaaaccaatcgttttgagaattgg |
15467594 |
T |
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| Q |
411 |
attagtggactaatgtgtccttgtgctggatatgggatcactaacacatgaacgttgttattgt |
474 |
Q |
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| T |
15467595 |
attagtggactaatgtgtccttgtgctggatatgggatcactaacacatgaacgttgttgttgt |
15467658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 15474746 - 15475209
Alignment:
| Q |
11 |
caaaggcaattcatcaacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataa |
110 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15474746 |
caaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataa |
15474845 |
T |
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| Q |
111 |
ataccatgttgtttagcaacatcaagtgcccaaggtagaaaagaatcatagacaatgcatgtgattggtgttgaagttttttggtatttttgaatgatgt |
210 |
Q |
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|| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| || |
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| T |
15474846 |
atccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtgattggtgttgaagttttttggtgtttttgaatgaggt |
15474945 |
T |
|
| Q |
211 |
ttgagagtgaattggaaccattggttttgaatgaagtgagaaaaagttcaacattgttggcttgtgaaaaaccggattcgtcgaacccatcagagattgg |
310 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15474946 |
ttgagagtgttttggaaccattggttttgaatgaattgagaaagagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattgg |
15475045 |
T |
|
| Q |
311 |
ttcgacggatacgtttggtgcggttatggattgaacagtgtaatgtgttgttgcaaatgttgttttgatgccttttgaaaccaatcgttttgagaattgg |
410 |
Q |
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||||||||| | ||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
15475046 |
ttcgacggagatgtttggtgcagtgatggatttaacagtgtaatgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattgg |
15475145 |
T |
|
| Q |
411 |
attagtggactaatgtgtccttgtgctggatatgggatcactaacacatgaacgttgttattgt |
474 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||| |
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| T |
15475146 |
attagtggactaatgtgtccttgtgctgggtatggaatcactaagacatgaacattgttgttgt |
15475209 |
T |
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