View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_24 (Length: 445)
Name: NF18674_high_24
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_24 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 30391216 - 30390797
Alignment:
| Q |
18 |
ggctctgctttggatcatccttctcatggtgtcattgggattgtgtttcgatctcaccttgctgtttttggaggagctcttgtgcagaatattggttatt |
117 |
Q |
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| T |
30391216 |
ggctctgctttggatcatccttctcatggtgtcattgggattgtgtttcgatctcaccttgctgtttttagaggagctcttgtgcagaatattggttatg |
30391117 |
T |
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| Q |
118 |
ccatgccctttggaagcagagttcagtgctttcatgattgcgattgagaaggctcttgaaatgcatatgaataatatttgggtacaatgtgactctctga |
217 |
Q |
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| T |
30391116 |
ccatgccctt-ggaagcagagttcaatgctttcatgattgcgattgagaaggctcttgaaatgcatatgaataatatttgggtagaatgtgactctctga |
30391018 |
T |
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| Q |
218 |
ttgtggttaaagcttttcatcaggatgtgggagtgccttggcggatgcacaacagatggttcaactgtaagatccttgctagacagatgggatgcatccg |
317 |
Q |
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| T |
30391017 |
ttgtggttaaagcttttcatcaggatgtggtagtgccttggcggatgcacaacagatggttcaactataagatccttgctagacagatggaatgcatctg |
30390918 |
T |
|
| Q |
318 |
ttctcatactcctcgagagggaaatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgggactctccacct |
417 |
Q |
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| T |
30390917 |
ttctcatactcctcgagagggaaatatggtggctgatgtccttgctaagaatgggcaaggtctttctatgtactcttctcaacggtgggactctccaccc |
30390818 |
T |
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| Q |
418 |
gcgtttgctttacctatgcta |
438 |
Q |
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| T |
30390817 |
gcgtttgctttacctatgcta |
30390797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 14867939 - 14867874
Alignment:
| Q |
340 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
405 |
Q |
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| T |
14867939 |
aatatggttgttgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
14867874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 17013572 - 17013637
Alignment:
| Q |
340 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
405 |
Q |
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| T |
17013572 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
17013637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 71914 - 71968
Alignment:
| Q |
351 |
tgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
405 |
Q |
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| T |
71914 |
tgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
71968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 20267729 - 20267794
Alignment:
| Q |
340 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
405 |
Q |
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| T |
20267729 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctttcaatggtgg |
20267794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 14236746 - 14236681
Alignment:
| Q |
340 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
405 |
Q |
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| T |
14236746 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctttcaatggtgg |
14236681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 52904541 - 52904602
Alignment:
| Q |
349 |
gctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgggactc |
410 |
Q |
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| T |
52904541 |
gctgatgcccttgctaagaatgggcaaggcctagctttttactcttatcagtggtgggactc |
52904602 |
T |
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