View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_30 (Length: 425)
Name: NF18674_high_30
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_30 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 27305815 - 27305641
Alignment:
| Q |
247 |
ccttaaccaattaaattcttcccgataaattttgagtgtgattttaatttgatgctaatccttaagtgccaatttaatgagtttgagtttttcatttaga |
346 |
Q |
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| T |
27305815 |
ccttaaccaatttaattcttcccgataaattttgagtgtgattttaatttgattctaatccttaagtgccaatttaatgagtttgagtttttcttttgaa |
27305716 |
T |
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| Q |
347 |
acaaatccaccccaccgatcaacttgaaaagaatcccatttctcctgaacaaattgttaatactccggaacatcggccc |
425 |
Q |
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| T |
27305715 |
acaaatccactccacccatcaac----aaagaatcccatttctcccgaacaaattgtttataccccagaacatcggccc |
27305641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27306129 - 27306029
Alignment:
| Q |
1 |
ctcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatatagttgttatgccaaattggaaaagattcaccatca |
100 |
Q |
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| T |
27306129 |
ctcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatatagttgttatgccaaattggaaaagattcaccatca |
27306030 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
27306029 |
t |
27306029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 27305949 - 27305812
Alignment:
| Q |
87 |
aagattcaccatcataaattcagcattgactgttgccaacaaatattagtattcac--tcttgacaacaaatacaaatcagcagtaagaacatgcaattc |
184 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
27305949 |
aagattcaccatcataaattcagctttaactgttgccaacaaatactagtattcacactcttgacgataaatacaaatcaaccgtaagaacatgcaattc |
27305850 |
T |
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| Q |
185 |
gtccacttcagcctctagaagcaaagcattctcccctt |
222 |
Q |
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| T |
27305849 |
ccccacttcggcctctagaagcaaatcattctcccctt |
27305812 |
T |
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