View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_31 (Length: 424)
Name: NF18674_high_31
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 105 - 409
Target Start/End: Complemental strand, 12418920 - 12418616
Alignment:
| Q |
105 |
tcacatcagttcaaagtcataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
204 |
Q |
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| T |
12418920 |
tcacatcagttcaaagaaataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
12418821 |
T |
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| Q |
205 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
304 |
Q |
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| T |
12418820 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
12418721 |
T |
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| Q |
305 |
acggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtcttgaaccttgatagtgaaggttaaaactaattaaaacatgaaattgtgac |
404 |
Q |
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| T |
12418720 |
acggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtcttgaatcttgatagtgaaggttaaaactaattaaaacatgaaattgtgac |
12418621 |
T |
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| Q |
405 |
tattc |
409 |
Q |
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||||| |
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| T |
12418620 |
tattc |
12418616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 12419369 - 12419278
Alignment:
| Q |
15 |
aacaataattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacnnnnnnnntctttaatgtcactcacatc |
106 |
Q |
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| T |
12419369 |
aacaataattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacaaaaaaaatctttaatgtcactcacatc |
12419278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 12654794 - 12654848
Alignment:
| Q |
277 |
tgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaagga |
331 |
Q |
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| T |
12654794 |
tgaacaagtttgttattagcttaggtacatggagagtttatagaacattgaagga |
12654848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 15329118 - 15329011
Alignment:
| Q |
247 |
tttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaaggaagcaaaagtattaaa |
346 |
Q |
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| T |
15329118 |
tttctgcataattatgtagaaaaat--gtgtgatcaagtttgttattagcttagtcacatggagagtttatagaaaggggaaggaagcaaaagtattaag |
15329021 |
T |
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| Q |
347 |
aaagggtctt |
356 |
Q |
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|||| ||||| |
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| T |
15329020 |
aaagagtctt |
15329011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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