View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_32 (Length: 415)
Name: NF18674_high_32
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 43489078 - 43489473
Alignment:
| Q |
1 |
aaaagaattggtagaagaagacctcgttacatgaatacaaatggtcaaacacattattctcttgtcatgt-----tatgatgtcgctaacgtgccacttt |
95 |
Q |
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| T |
43489078 |
aaaagaattggtagaagaagacctcgttacatgaatacaaatggtcaaacacattattctcttgtcatgttatgttatgatgtcgctaacgtgccacttt |
43489177 |
T |
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| Q |
96 |
caaaatttcaaaacaatggaacataacttgcaaactaaatacaattactccaattggtagggaatcaaatttctttcaaatattgagtactactatctaa |
195 |
Q |
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| T |
43489178 |
caaaatttcaaaacaatggaacatagcttgcaaactaaatacaattactccaattggtagggaatcaaatttctttcaaatattgagtactactatctaa |
43489277 |
T |
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| Q |
196 |
caaagaaaaattaaaatttgcatttctagaaacattatcaccacaaaaaatgtcatgaattgtgaatgaattgcattagctattggaaatataaaatgta |
295 |
Q |
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| T |
43489278 |
caaagaaaaattaaaatttgcatttctagaaaaattatcaccacaaaaaatgtcatgaattgcgaatgaattgcattag-tattggaaatataaaatgta |
43489376 |
T |
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| Q |
296 |
ataaaagagcaaatttgtgtttggatcttcagcagcagaaggtccacatgatctaaattcaagaaaattacaccagataaaaatggaggatgtagca |
392 |
Q |
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| T |
43489377 |
ataaaagagcaaatttgtgtttggatcttcagcaggaggaggtgcacatgatctaaattcaagaaaattacaccagataaaaatggacgatgtagca |
43489473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 43489523 - 43489556
Alignment:
| Q |
359 |
aaaattacaccagataaaaatggaggatgtagca |
392 |
Q |
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| T |
43489523 |
aaaattacaccagataaaaatggacgatgtagca |
43489556 |
T |
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