View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_34 (Length: 402)
Name: NF18674_high_34
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 54 - 392
Target Start/End: Complemental strand, 45218401 - 45218063
Alignment:
| Q |
54 |
ccacaagacccaatgtcttgatttttaggtcttgctatactaggaccttgtaactataaaatagtgacatctttttctacacatatataacacagcattt |
153 |
Q |
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| T |
45218401 |
ccacaagaaccaatgtcttgatttttaggtcttgctatactaggaccttgtaactataaaatagtgacatctttttctactcatatataacacagcattt |
45218302 |
T |
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| Q |
154 |
actgctacattacatcatttacaaacttcctctttcttattgttaaaccaaactttgatcacatatacagaaagaaaatcattgcatattttcctaccat |
253 |
Q |
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| T |
45218301 |
actgctacattacatcattcacaaacttcctctttcttattgttaaaccaaactttgatcacatatacagaaagaaaatcattgcatattttcctaccat |
45218202 |
T |
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| Q |
254 |
atggaccttctaagattagagccatgtttatctaataatttgaacatctcattttctgagaagagacaaacagaaaatgaagagaaaaaacatcttctac |
353 |
Q |
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| T |
45218201 |
atggaccttctaagattagagccatgtttatctaataatttgaacatctcattttctgagaagagacaaacagaaaatgaagagaaaaaacatcttctac |
45218102 |
T |
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| Q |
354 |
tggatttaactcttcctagtaaagattcttgtgatgatg |
392 |
Q |
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| T |
45218101 |
tggatttaactcttcctagtaaagattcttgtgatgatg |
45218063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 687561 - 687508
Alignment:
| Q |
66 |
atgtcttgatttttaggtcttgctatactaggaccttgtaactataaaatagtg |
119 |
Q |
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| T |
687561 |
atgtcttaatttttaggtctctctatattaagaccttgtaactgtaaaatagtg |
687508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 704928 - 704875
Alignment:
| Q |
66 |
atgtcttgatttttaggtcttgctatactaggaccttgtaactataaaatagtg |
119 |
Q |
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| T |
704928 |
atgtcttaatttttaggtctctctatattaagaccttgtaactgtaaaatagtg |
704875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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