View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_36 (Length: 397)
Name: NF18674_high_36
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 23783161 - 23782801
Alignment:
| Q |
13 |
aatatgtatttatttgatttcctttttcactttgtttcctataatagtttttggtcttctaaggagtcttgtgaaggaagactattattgctatataaac |
112 |
Q |
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| T |
23783161 |
aatatgtatttatttgatttcctttttcactttgtttcctataatagtttttggtcttctaaggagtcttgtgaaggaagactattattgctatataaac |
23783062 |
T |
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| Q |
113 |
tcttgaaggggagtttcgcttctcatctcatcctctccaccttgagagattagtatctgcaactgcgaacatcgagttcatacaaaaacaggttattatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23783061 |
tcttgaaggggagtttcgcttctcatctcatcctctacaccatgagagattagtatctgcaattgcgaacatcgagttcatacaaaaa-aggttattatt |
23782963 |
T |
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| Q |
213 |
gttaattttccggttacaaatttaatcatgggtccaccaagtcacaaatcacatgtctccaaaagaacaagaaggttaagaattatctatgatgacccag |
312 |
Q |
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| T |
23782962 |
gttaattttccggtt---------atcatgggtccaccaagtcacaaatcacatgtctccaaaagaacaagaaggttaagaattatctatgatgacccag |
23782872 |
T |
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| Q |
313 |
atgcaacagattcatcatcagatgaagaaaatcattgtgtccaggaacaaggtaagaggaagagatgtgtg |
383 |
Q |
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| T |
23782871 |
atgcaacagattcatcatcagatgaagaaaatcattatgtccaggaacaaggtaagaggaagagatgtgtg |
23782801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 23870114 - 23869754
Alignment:
| Q |
13 |
aatatgtatttatttgatttcctttttcactttgtttcctataatagtttttggtcttctaaggagtcttgtgaaggaagactattattgctatataaac |
112 |
Q |
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| T |
23870114 |
aatatgtatttatttgatttcctttttcactttgtttcctataatagtttttggtcttctaaggagtcttgtgaaggaagactattattgctatataaac |
23870015 |
T |
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| Q |
113 |
tcttgaaggggagtttcgcttctcatctcatcctctccaccttgagagattagtatctgcaactgcgaacatcgagttcatacaaaaacaggttattatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23870014 |
tcttgaaggggagtttcgcttctcatctcatcctctacaccatgagagattagtatctgcaattgcgaacatcgagttcatacaaaaa-aggttattatt |
23869916 |
T |
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| Q |
213 |
gttaattttccggttacaaatttaatcatgggtccaccaagtcacaaatcacatgtctccaaaagaacaagaaggttaagaattatctatgatgacccag |
312 |
Q |
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| T |
23869915 |
gttaattttccggtt---------atcatgggtccaccaagtcacaaatcacatgtctccaaaagaacaagaaggttaagaattatctatgatgacccag |
23869825 |
T |
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| Q |
313 |
atgcaacagattcatcatcagatgaagaaaatcattgtgtccaggaacaaggtaagaggaagagatgtgtg |
383 |
Q |
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| T |
23869824 |
atgcaacagattcatcatcagatgaagaaaatcattatgtccaggaacaaggtaagaggaagagatgtgtg |
23869754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 258652 - 258570
Alignment:
| Q |
265 |
atgtctccaaaagaacaagaaggttaagaattatctatgatgacccagatgcaacagattcatcatcagatgaagaaaatcat |
347 |
Q |
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|||| |||||||| ||||||||| | ||||||||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
258652 |
atgtttccaaaagcacaagaaggatgagaattatctatgatgatccttatgcaacggattcatcatcagatgaaaataatcat |
258570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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