View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_high_38 (Length: 394)
Name: NF18674_high_38
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_38 |
 | |
|
| [»] scaffold1712 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 3562013 - 3561642
Alignment:
| Q |
1 |
caacattttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3562013 |
caacattttttatcagtagagtttggttttcaaacatgccggacaaaatgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaata |
3561914 |
T |
|
| Q |
101 |
aaatatgttttgtctaattacattaataaataacttataaatgtataagattggaaatttaaaattataatttacaacaggggtttaacctttaaaagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3561913 |
aaatatgttttgtctaattacattaataaataacttataaatgtataagattggaaatttaaaattataatttacaacaggggcttaacctttaaaagat |
3561814 |
T |
|
| Q |
201 |
caacaatgaaagaaaatttaaatgagtgagatttgtttgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaactac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3561813 |
caacaatgaaagaaaatttaaatgagtgagatttgtttgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaactac |
3561714 |
T |
|
| Q |
301 |
aagtaagacaaaaacaagtgtctgattaaaattataaaagtgtgtgtaccaggttctatgtgagtggaatag |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3561713 |
aagtaagacaaaaacaagtgtctgattaaaattatgaaagtgtgtgtaccaggttctatgtgggtggaatag |
3561642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 349
Target Start/End: Complemental strand, 32834219 - 32833906
Alignment:
| Q |
46 |
aagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaatatgttttgtctaattacattaataaataacttataaat--- |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32834219 |
aagtgagcgtcttaagtttcaccattaaaataaatttaagctcaaccaattaataaaatatgttttgtctcataacattaataaataacttataaattat |
32834120 |
T |
|
| Q |
143 |
----gtataagattggaaatttaaaattataatttacaacaggggtttaacctttaaaagatcaacaatgaaagaaaatttaaatgagtgag---atttg |
235 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||| ||| |||||||||||||| |||||||||| |||||| | |||||||||||| | || |
|
|
| T |
32834119 |
aaatgtataagattggaaatataaaattaaattttacaataggtctttaacctttaaaaaatcaacaatggaagaaattataaatgagtgaggatagttc |
32834020 |
T |
|
| Q |
236 |
tttgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaactacaagtaagacaaaaacaagtgtctgattaaaattat |
335 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||| ||||| | |
|
|
| T |
32834019 |
tttgtattgtatgtagtgtttgtgtttcttttaatgaaattttattatggatgggagacaactacaagtgagacaaaaataaatgtctgattgaaattgt |
32833920 |
T |
|
| Q |
336 |
aaaagtgtgtgtac |
349 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
32833919 |
gaaagtgtgcgtac |
32833906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3561642 - 3561610
Alignment:
| Q |
344 |
gtgtaccaggttctatgtgagtggaatagaaaa |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3561642 |
gtgtaccaggttctatgtgagtggaatagaaaa |
3561610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 31134752 - 31135123
Alignment:
| Q |
1 |
caacattttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaata |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||| || || ||||||||||||||||||| ||||||| |||||||| || ||| |||||||| |
|
|
| T |
31134752 |
caacattttttatcaatagagtttggttatcagacatgccgaacgaattgagcatcttaagtttcactattaacacaaatttaagcttaactaattaata |
31134851 |
T |
|
| Q |
101 |
aaatatgttttgtctaattacattaataaataacttataaatgtataagattggaaatttaaaattataatttacaacaggggtttaacctttaaaagat |
200 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
31134852 |
aaatatgttccgtctcattacattaataaataaattataaatgtacaagattggaaatataaaattaaaatttaccataggggtttaaactttaaaagac |
31134951 |
T |
|
| Q |
201 |
caacaatgaaagaaaatttaaatgagtgagat---ttgtttgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaac |
297 |
Q |
| |
|
|||||||| || ||| | |||||||| ||| | ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
31134952 |
caacaatggaataaactataaatgagagaggtttgttgtttgtattgtatgtagggtgtgtgtttcttttaatgaaattttattatgtatgagagacaac |
31135051 |
T |
|
| Q |
298 |
tacaagtaagacaaaaacaagtgtctgattaaaattataaaagtgtgtgtaccaggttctatgtgagtggaata |
371 |
Q |
| |
|
||||||| ||||||||| || || ||||| ||||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
31135052 |
tacaagtgagacaaaaataaatg--tgattgaaattgtgaaagtgtgtgtaccgtgttcgatgtgagtggaata |
31135123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 6 - 373
Target Start/End: Complemental strand, 35966263 - 35965893
Alignment:
| Q |
6 |
ttttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaata |
105 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| || |||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
35966263 |
ttttttatcagtagagtctagtttttaaacatgccaaacgaagtgaccatcttaagtttcatcattaacacaaatttaagctcaaaaaattaataaaata |
35966164 |
T |
|
| Q |
106 |
tgttttgtctaattacattaataaataacttataaat-------gtataagattggaaatttaaaattataatttacaacaggggtttaacctttaaaag |
198 |
Q |
| |
|
|||| || | |||||||| ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
35966163 |
tgttccgtttcattacatttataaataacttataaattataaatgtataagactggaaatgtaaaattaaaatttacaataggagtttaacctttaaaa- |
35966065 |
T |
|
| Q |
199 |
atcaacaatgaaagaaaatttaaatgagtgagatttgtt---tgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagaca |
295 |
Q |
| |
|
||||| |||| |||||| | ||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
35966064 |
atcaataatggaagaaactataagtgagtgaggtttgttgtttgtattgtatgtagtgtttgtgtttcttttaatgaaattttattatagatgtaagaca |
35965965 |
T |
|
| Q |
296 |
actacaagtaagacaaaaacaagtgtctgattaaaattataaaagtgtgtgtaccaggttctatgtgagtggaataga |
373 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||| | ||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
35965964 |
actacaagtgagacaaaaacaaatgtctg------attgtgaaagtgtgtataccatgttctatgtgagtgcaataga |
35965893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 52406011 - 52406391
Alignment:
| Q |
1 |
caacattttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaata |
100 |
Q |
| |
|
||||||||| |||||| ||||| | |||| || ||||||| || |||||||| |||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
52406011 |
caacattttctatcagcagagtctagtttccaggcatgccgaacgaagtgagcgtcttaagtttcatcattaacacaaatttaagctcaacaaattaata |
52406110 |
T |
|
| Q |
101 |
aaatatgttttgtctaattacattaataaataacttataaat-------gtataagattggaaatttaaaattataatttacaacaggggtttaaccttt |
193 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||| ||||||||||| |||| |||||||| | ||||||| ||||||||||||||| |
|
|
| T |
52406111 |
aaatatgcttcgtctcattacattaataaataacttataaataaaaaatgtataagattgaaaatataaaattaaattttacaataggggtttaaccttt |
52406210 |
T |
|
| Q |
194 |
aaaagatcaacaatgaaagaaaatttaaatgagtgag---atttgtttgtattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtg |
290 |
Q |
| |
|
|||| ||||||||||||| ||| | ||||| |||||| | ||||||||||||||||| | ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
52406211 |
aaaaaatcaacaatgaaa-aaattataaattagtgaggataattgtttgtattgtatgt-gtgtttgtctttcttttaatgaaattttattatggatata |
52406308 |
T |
|
| Q |
291 |
agacaactacaagtaagacaaaaacaagtgtctgattaaaattataaaagtgtgtgtaccaggttctatgtgagtggaataga |
373 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| ||||| ||||| | |||||||||| || ||||||||||||| ||||||| |
|
|
| T |
52406309 |
agacaactacaagtgagacaaaaataaatgtgtgattgaaattgtgaaagtgtgtgatccgtgttctatgtgagtagaataga |
52406391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 49489104 - 49488884
Alignment:
| Q |
2 |
aacattttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataa |
101 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || || || ||| | |||||| |||||||| ||||| || ||||| ||| ||||||||||| |
|
|
| T |
49489104 |
aacattttttatcaatagagtatggttttcaagcatgtcgaacgaaatgaacttcttaaatttcaccaataacacaagtttaagttcagcaaattaataa |
49489005 |
T |
|
| Q |
102 |
aatatgttttgtctaattacattaataaataacttataaat-------gtataagattggaaatttaaaattataatttacaacaggggtttaaccttta |
194 |
Q |
| |
|
| | |||| |||| ||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||| || |||||||||||||||| |
|
|
| T |
49489004 |
agaaggtttcgtctcattacattaataaataaattataaattataaatgtataagattggaaatataaaattaaaatttagaataggggtttaaccttta |
49488905 |
T |
|
| Q |
195 |
aaagatcaacaatgaaagaaa |
215 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
49488904 |
aaagatcaacaatggaagaaa |
49488884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 49488857 - 49488770
Alignment:
| Q |
287 |
tgtgagacaactacaagtaagac-aaaaacaagtgtctgattaaaattataaaagtgtgtgtaccaggttctatgtgagtggaataga |
373 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | ||||||| ||||| | ||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
49488857 |
tgtgagacaactacaagtgagacaaaaaacaaatatctgattgaaattgtgaaagtgtgtctaccatgttctatttgagtagaataga |
49488770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 19462903 - 19463179
Alignment:
| Q |
6 |
ttttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaata |
105 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| ||| || ||||||||||||||||| |||||||||||| |||||||| || ||| ||||||||||||| |
|
|
| T |
19462903 |
ttttttatcaatagagtttggttatcagacataccgaacgaagtgagcatcttaagtatcaccattaacacaaatttaagcttaactaattaataaaata |
19463002 |
T |
|
| Q |
106 |
tgttttgtctaattacattaataaataacttataaatgtataaga-ttggaaatttaaaattataatttacaacaggggtttaacctttaaaagatcaac |
204 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||| |||||| |||||||| |||||||| ||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
19463003 |
tgttccgtctcattacattaataaataaattataaat-cataagatttggaaatataaaattaaaatttaccataggggtttaaactttaaaagatcaac |
19463101 |
T |
|
| Q |
205 |
aatgaaagaaaatttaaatgagtgagat---ttgtttgtattgtatgtagcatttgtgtttcttttaatgaaattttatt |
281 |
Q |
| |
|
|||| || ||| | |||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19463102 |
aatggaataaactataaatgagagaggttcgttgtttgtattgtatgtag--ggtgtgtttcttttaatgaaattttatt |
19463179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 37499502 - 37499719
Alignment:
| Q |
6 |
ttttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaata |
105 |
Q |
| |
|
|||||||||| |||||||||||| | | |||||||| || ||||||||||||||||| |||||||||||| |||||||| || ||| ||||||||||||| |
|
|
| T |
37499502 |
ttttttatcaatagagtttggttattagacatgccgaacgaagtgagcatcttaagtatcaccattaacacaaatttaagcttaactaattaataaaata |
37499601 |
T |
|
| Q |
106 |
tgttttgtctaattacattaataaataacttataaatgtataaga-ttggaaatttaaaattataatttacaacaggggtttaacctttaaaagatcaac |
204 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| |||||| |||||||| |||||||| ||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
37499602 |
tgttctgtctcattacattaataaataaattataaat-cataagatttggaaatataaaattaaaatttaccataggggtttaaactttaaaagatcaac |
37499700 |
T |
|
| Q |
205 |
aatgaaagaaaatttaaat |
223 |
Q |
| |
|
|||| || |||||| |||| |
|
|
| T |
37499701 |
aatggaataaaattaaaat |
37499719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 19463176 - 19463303
Alignment:
| Q |
240 |
tattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaactacaagtaagacaaaaacaagtgtctgattaaaattataaaa |
339 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || ||||||||| || || ||||| ||||| | ||| |
|
|
| T |
19463176 |
tattctatgtagtgtttgtgtttcttttaatgaaattttattatgtatgagaaacaactacatgtgagacaaaaataaatg--tgattgaaattgtgaaa |
19463273 |
T |
|
| Q |
340 |
gtgtgtgtaccaggttctatgtgagtggaata |
371 |
Q |
| |
|
|||||| || ||||||||||||||||||| |
|
|
| T |
19463274 |
--gtgtgtcccgtgttctatgtgagtggaata |
19463303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 37499750 - 37499824
Alignment:
| Q |
240 |
tattgtatgtagcatttgtgtttcttttaatgaaattttattatggatgtgagacaactacaagtaagacaaaaa |
314 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || ||||||||| |
|
|
| T |
37499750 |
tattatatgtagtgtttgtgtttcttttaatgaaattttattatgtatgagaaacaactacaggtgagacaaaaa |
37499824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1712 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold1712
Description:
Target: scaffold1712; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 305 - 514
Alignment:
| Q |
6 |
ttttttatcagtagagtttggttttcaaacatgccggacaaagtgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaata |
105 |
Q |
| |
|
|||||||||| |||||| |||||| || |||||| || |||||||| |||||| || ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
305 |
ttttttatcaatagagtctggtttccaggcatgccaaacgaagtgagcttcttaaattgcaccattaacacaaatttaagctcaacaaattaataaaata |
404 |
T |
|
| Q |
106 |
tgttttgtctaattacattaataaataacttataaatgtataagattggaaatttaaaattataatttacaacaggggtttaacctttaaaagatcaaca |
205 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||| || |||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
405 |
tgttttgtctcattacattaataaataaattataaatatataagattgaaaatataaaagtaaaatttagaacaggagtttaacctttaaaagattaaca |
504 |
T |
|
| Q |
206 |
atgaaagaaa |
215 |
Q |
| |
|
||| |||||| |
|
|
| T |
505 |
atggaagaaa |
514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 25667521 - 25667679
Alignment:
| Q |
49 |
tgagcatcttaagtttcaccattaacataaatttaatctcaacaaattaataaaatatgttttgtctaattacattaataaataacttataaatgtataa |
148 |
Q |
| |
|
|||| ||||| |||||| |||| || |||||||||| |||||||| |||||| |||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
25667521 |
tgagtatcttgagtttccccatcaatataaatttaagctcaacaagctaataatatatccccactctaattacattaataaataaattacaaatgtatat |
25667620 |
T |
|
| Q |
149 |
gattggaaatttaaaattataattta-caacaggggtttaacctttaaaagatcaacaa |
206 |
Q |
| |
|
||||| |||| |||||||| | |||| || | ||||||||| ||||||||||||||| |
|
|
| T |
25667621 |
gattgaaaatataaaattaaagtttaccatcgaaggtttaacccttaaaagatcaacaa |
25667679 |
T |
|
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