View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_high_39 (Length: 391)
Name: NF18674_high_39
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 30041821 - 30041540
Alignment:
| Q |
16 |
tcaacttctgatcattatccaattttattaaatagggataccgaatgctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30041821 |
tcaacttctgatcattatccaattttattaaatagggataccgaatgctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgtt |
30041722 |
T |
|
| Q |
116 |
gaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggtttgttgattgttgaaaaactagatcattgcgcataagagcttagcacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30041721 |
gaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggtttgttgattgttgaaaaactagatcattgtgcataagagcttagcacat |
30041622 |
T |
|
| Q |
216 |
ggaacaaagtgaatcacaatggtctaaaagaggagatggatgcttgtcgtcgtgatctaactcgttgtcggaaccaaggggc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30041621 |
ggaacaaagtgaatcacaatggtctaaaagaggagatggatgcttgtcgtcgtgatctaactcgttgttggaaccaaggggc |
30041540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 29981749 - 29981848
Alignment:
| Q |
292 |
aggggcgtctgcagacccggttcggttgacaagtttacggaagaagatgattgagttaatgctatggagcctgttatttctgcaaaagacaatgattttc |
391 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981749 |
aggggcatctgcagacccggttcggttgacaagtttacggaagaagatgattgagttaatgctatggagcctgttatttctgcaaaagacaatgattttc |
29981848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 14860465 - 14860416
Alignment:
| Q |
89 |
tttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgt |
138 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
14860465 |
tttaaatttgagaatgcatggtgcattgaaccatgtattcgtgatgttgt |
14860416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 43992610 - 43992510
Alignment:
| Q |
63 |
ctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgc |
162 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
43992610 |
ctcgtgtctgggtgcctaaaagaacctttaaatttgagaatgcttggtgtgtagaaccgagcattcatgatgttgtttctgacagctggttgtctagtgc |
43992511 |
T |
|
| Q |
163 |
a |
163 |
Q |
| |
|
| |
|
|
| T |
43992510 |
a |
43992510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 23062678 - 23062602
Alignment:
| Q |
90 |
ttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
166 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| | ||||||||| |||| |||||||||||| | |||||| ||||| |
|
|
| T |
23062678 |
ttaaatttgaaaatgcatggtgtgtggaaccaggaattcatgatattgtctctgatagctggttatctagtacaggt |
23062602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 32880471 - 32880538
Alignment:
| Q |
93 |
aatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagt |
160 |
Q |
| |
|
||||||| ||||| |||||||| |||||| | ||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
32880471 |
aatttgaaaatgcatggtgtgtggaaccaggaattcatgatattgtctctgatagctggttatctagt |
32880538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 21115159 - 21115248
Alignment:
| Q |
77 |
cctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
166 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||| |||| |||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
21115159 |
cctaaaagaaattttaagtttgaaaatgtgtggtgtgttgaaccaggtatccatgatgttgtttccgattgttgggtttctagtgcaggt |
21115248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 18478111 - 18478192
Alignment:
| Q |
63 |
ctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctga |
144 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| |
|
|
| T |
18478111 |
ctcgtgtctgggtgcctaaaagaacctttaaatttgagaatgcttggtctgtagaaccgggcattcatgatgttgtttctga |
18478192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 15229395 - 15229469
Alignment:
| Q |
92 |
aaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
166 |
Q |
| |
|
|||||||| |||||||||||||| |||| | | ||| ||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
15229395 |
aaatttgaaaatgcttggtgtgtggaacaaggaatttatgatattgtttctgatagttggtcttctagtgcaggt |
15229469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 25907681 - 25907604
Alignment:
| Q |
89 |
tttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
166 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| | |||| |||| |||| |||||||||||| | |||||| ||||| |
|
|
| T |
25907681 |
tttaaatttgaaaatgcatggtgtgtggaaccgggaattcgtgatattgtctctgatagctggttatctagtacaggt |
25907604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University