View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_46 (Length: 372)
Name: NF18674_high_46
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 337102 - 336755
Alignment:
| Q |
18 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337102 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccaccgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
337003 |
T |
|
| Q |
118 |
ctttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagattcctattgtatttccattgatgtgaatctgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
337002 |
ctttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatgtgaatctgt |
336903 |
T |
|
| Q |
218 |
tgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacattcaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336902 |
agtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacattcaat |
336803 |
T |
|
| Q |
318 |
ggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336802 |
ggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
336755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 341140 - 340795
Alignment:
| Q |
18 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
117 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
341140 |
atgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacatgattcaatattggaatcaatgatttctcaa |
341041 |
T |
|
| Q |
118 |
ctttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagattcctattgtatttccattgatgtgaatctgt |
217 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
341040 |
ctttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatctgaatctgt |
340941 |
T |
|
| Q |
218 |
tgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacattcaat |
317 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
340940 |
agtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcatgatgtagtgaacattcaat |
340841 |
T |
|
| Q |
318 |
ggatcgtttgtgattacagcatacatgttggtaaaccatggtccta |
363 |
Q |
| |
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||||| ||||||| ||| |||||||| ||||||||||||||||| |
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| T |
340840 |
ggatcagttgtgataacaccatacatgccggtaaaccatggtccta |
340795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 332188 - 332085
Alignment:
| Q |
18 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
332188 |
atgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgttgaacatgtttcaataaaggaaataatgatttctcaa |
332089 |
T |
|
| Q |
118 |
cttt |
121 |
Q |
| |
|
|||| |
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|
| T |
332088 |
cttt |
332085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 376883 - 376738
Alignment:
| Q |
18 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | ||| ||||||||||| | |||| | |
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| T |
376883 |
atgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgaccc---ttgttgttgtacatggtccaacaaaggaatcaaacttctctcca |
376787 |
T |
|
| Q |
118 |
ctttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgttt |
166 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
376786 |
acttgttttgaatgattttctcttgaaacaattcaaagcttctttgttt |
376738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 356272 - 356396
Alignment:
| Q |
18 |
atgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaa |
117 |
Q |
| |
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||||| || |||||||| |||||||| || ||||||||||| |||||||| || ||||||||| ||||| | ||| ||||||||||| |||||| | |
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| T |
356272 |
atgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagcc---ttgttgttgtacatggtccaacaaaggaatcaaacttttctcca |
356368 |
T |
|
| Q |
118 |
ctttgttgtgaatgattttctcttgaaa |
145 |
Q |
| |
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||||| ||||||||||||| |||||| |
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|
| T |
356369 |
acttgttttgaatgattttcttttgaaa |
356396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 347622 - 347737
Alignment:
| Q |
27 |
aatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaactttgttgt |
126 |
Q |
| |
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|||||||| |||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | || ||||||||||| | |||| | ||||| | |
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| T |
347622 |
aatgtgaaacgattgaagacatcttgtaaatccaccactgaccc---ttgttgttgtacatggtcaaacaaaggaatcaaacttctctccaacttgtttt |
347718 |
T |
|
| Q |
127 |
gaatgattttctcttgaaa |
145 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
347719 |
gaatgattttcttttgaaa |
347737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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