View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_high_49 (Length: 359)

Name: NF18674_high_49
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_high_49
NF18674_high_49
[»] chr4 (8 HSPs)
chr4 (138-341)||(35011432-35011635)
chr4 (134-199)||(23113114-23113179)
chr4 (134-199)||(34779221-34779286)
chr4 (119-195)||(15639017-15639093)
chr4 (125-196)||(23112918-23112989)
chr4 (140-199)||(25298434-25298493)
chr4 (119-199)||(2717306-2717386)
chr4 (9-68)||(13956815-13956875)
[»] chr7 (4 HSPs)
chr7 (20-91)||(22341135-22341206)
chr7 (9-83)||(5220238-5220312)
chr7 (118-199)||(33258470-33258551)
chr7 (134-199)||(41506525-41506590)
[»] chr8 (8 HSPs)
chr8 (119-201)||(41258925-41259007)
chr8 (120-199)||(32723240-32723319)
chr8 (134-199)||(38442441-38442506)
chr8 (131-187)||(37078090-37078146)
chr8 (8-83)||(30869755-30869830)
chr8 (9-68)||(34391069-34391128)
chr8 (134-199)||(28237296-28237361)
chr8 (140-197)||(37438518-37438575)
[»] chr3 (7 HSPs)
chr3 (134-199)||(25703920-25703985)
chr3 (134-199)||(28540956-28541021)
chr3 (134-199)||(41309410-41309475)
chr3 (134-199)||(53163246-53163311)
chr3 (140-199)||(48313689-48313748)
chr3 (121-199)||(22284838-22284916)
chr3 (142-199)||(43563725-43563782)
[»] chr2 (8 HSPs)
chr2 (134-199)||(25900781-25900846)
chr2 (134-199)||(41432565-41432630)
chr2 (119-199)||(43927736-43927816)
chr2 (120-199)||(11687970-11688049)
chr2 (134-201)||(24861744-24861811)
chr2 (134-199)||(24861883-24861949)
chr2 (134-199)||(39727762-39727827)
chr2 (119-199)||(33940491-33940571)
[»] chr6 (2 HSPs)
chr6 (119-199)||(18559439-18559519)
chr6 (134-199)||(7466478-7466543)
[»] chr1 (8 HSPs)
chr1 (115-190)||(2692832-2692907)
chr1 (115-185)||(33566814-33566884)
chr1 (9-68)||(25696101-25696160)
chr1 (9-63)||(10023692-10023746)
chr1 (134-172)||(34340606-34340644)
chr1 (118-199)||(2730383-2730464)
chr1 (142-199)||(42639990-42640047)
chr1 (115-199)||(45967389-45967473)
[»] scaffold0027 (1 HSPs)
scaffold0027 (119-199)||(144927-145007)
[»] chr5 (2 HSPs)
chr5 (134-186)||(2046987-2047039)
chr5 (119-185)||(18278862-18278928)
[»] scaffold0039 (1 HSPs)
scaffold0039 (134-199)||(53356-53421)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 138 - 341
Target Start/End: Complemental strand, 35011635 - 35011432
Alignment:
Q  138 tatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttacttttatggatttgtagtgcaacaagtttcatataaattgg 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35011635 tatgattttcttttataggaattaaaatcaaaattatgaatatttataaggatcatttacttttatggatttgtagtgcaacaagtttcatataaattgg 35011536  T
Q  238 tcaagtcctacttatgttcatcaatctcagtaccatataatagatcaatcttcagagcattgaacaaagatgacttgagctcgaaagcaattgcacatgc 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35011535 tcaagtactacttatgttcatcaatctcagtaccatataatagatcaatcttcagagcattgaacaaagatgacttgatctcgaaagcaattgcacatgc 35011436  T
Q  338 gggt 341  Q
    ||||    
T  35011435 gggt 35011432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 23113114 - 23113179
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| |||||||  ||||||  |||||||| ||||||||| |||||||||||||| |||||||||    
T  23113114 aaagtgtgattttaatttataaaaattaaaaacaaaattatgaatatttataaggaccatttactt 23113179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 34779221 - 34779286
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| |||| |||| |||||||  |||||| | ||||||||||||||||||||||||    
T  34779221 aaagtgtgattttattttgtagggattaaaaataaaattctgaatatttataaggatcatttactt 34779286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 15639093 - 15639017
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcattt 195  Q
    ||||||||| | || ||||| ||||||| |||| |||| | ||||| ||||||| | ||||||||||||||||||||    
T  15639093 ttttataaggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttataaggatcattt 15639017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 23112989 - 23112918
Alignment:
Q  125 aagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcattta 196  Q
    |||||||| ||||| ||||||| ||||||||| | |||||  |||||| | |||||||||||||| ||||||    
T  23112989 aagaattaaaaagtgtgattttattttatagggactaaaaataaaattttgaatatttataaggaccattta 23112918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 25298434 - 25298493
Alignment:
Q  140 tgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||| |||| |||||| ||||| ||||||| | |||||||||||||| |||||||||    
T  25298434 tgattttattttgtaggaaataaaaacaaaattctaaatatttataaggaccatttactt 25298493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 2717306 - 2717386
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||| | || |||||| ||| || |||||||||||||||||   ||||||| |||||||||| |||  ||||||||    
T  2717306 ttttataaggactaaaaagtacgatattattttataggaattaaaaatgaaattataaatatttatagggactatttactt 2717386  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 13956875 - 13956815
Alignment:
Q  9 aaccacctaaacacatgataccatatctg-gtctaaaaaaggacatctaataaaaaggtga 68  Q
    ||||||||||||||||||||||| | |||  |  |||||||||||||||| ||||||||||    
T  13956875 aaccacctaaacacatgataccacacctgacttaaaaaaaggacatctaacaaaaaggtga 13956815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 22341206 - 22341135
Alignment:
Q  20 cacatgataccatatctggtctaaaaaaggacatctaataaaaaggtgagaagccggctctacaggctcatt 91  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||| |||| || ||| ||||| |||||||||    
T  22341206 cacatgataccatacctgatctaaaaaaggacatctaacaaaaatgtgacaacccgactctataggctcatt 22341135  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5220312 - 5220238
Alignment:
Q  9 aaccacctaaacacatgataccatatctggtctaaaaaaggacatctaataaaaaggtgagaagccggctctaca 83  Q
    ||||||||||||||||||||||| |  ||| |||| ||||||||||||| ||||| |||| ||| || |||||||    
T  5220312 aaccacctaaacacatgataccacacttggcctaagaaaggacatctaacaaaaatgtgacaagtcgactctaca 5220238  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 33258470 - 33258551
Alignment:
Q  118 tttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    |||||||| ||| || ||||| ||||||| |||| |||| | ||||| ||||||| | |||||||||| |||||||||||||    
T  33258470 tttttataggaaataaaaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttatagggatcatttactt 33258551  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 41506525 - 41506590
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| ||||||||| | ||||| ||||||| | |||||||||| |||||||||||||    
T  41506525 aaagtgtgattttattttatagggactaaaaacaaaattctgaatatttatagggatcatttactt 41506590  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 41258925 - 41259007
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactttt 201  Q
    ||||||| |||||| ||||| ||||||| |||| |||| | ||||| ||||||||| ||||||||||| ||||||||| ||||    
T  41258925 ttttataggaattaaaaagtgtgattttattttgtagggactaaaaacaaaattataaatatttataaagatcatttattttt 41259007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 32723319 - 32723240
Alignment:
Q  120 tttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    |||||| ||| || ||||| ||||||| |||| |||||| ||||| ||||||| | | ||||||||||||||||||||||    
T  32723319 tttataggaactaaaaagtgtgattttattttgtaggaactaaaaacaaaattctgactatttataaggatcatttactt 32723240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 38442506 - 38442441
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| |||| |||| | ||||| ||||||||| |||||||||||||| |||||||||    
T  38442506 aaagtgtgattttattttgtagggactaaaaacaaaattatgaatatttataaggaccatttactt 38442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 37078146 - 37078090
Alignment:
Q  131 tacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataag 187  Q
    |||||||| ||||||| |||| |||||||||||| ||||||| | ||||||||||||    
T  37078146 tacaaagtgtgattttattttgtaggaattaaaaacaaaattttaaatatttataag 37078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 30869830 - 30869755
Alignment:
Q  8 taaccacctaaacacatgataccatatctggtctaaaaaaggacatctaataaaaaggtgagaagccggctctaca 83  Q
    |||||||||||||||||| ||||| | |||  |||||||  ||||||||| |||||||||| |||||  |||||||    
T  30869830 taaccacctaaacacatgctaccacacctgacctaaaaactgacatctaacaaaaaggtgacaagccaactctaca 30869755  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 34391128 - 34391069
Alignment:
Q  9 aaccacctaaacacatgataccatatctggtctaaaaaaggacatctaataaaaaggtga 68  Q
    |||||||||| |||||||||||| | || | ||||||||||||| |||| ||||||||||    
T  34391128 aaccacctaagcacatgataccacacctagcctaaaaaaggacaactaacaaaaaggtga 34391069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 28237361 - 28237296
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| |||| |||| | ||||| ||||||| | |||||||||| |||||||||||||    
T  28237361 aaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttatagggatcatttactt 28237296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 37438575 - 37438518
Alignment:
Q  140 tgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttac 197  Q
    ||||||| ||||||||  ||||||| ||||||| | |||||||||||||| |||||||    
T  37438575 tgattttattttatagtgattaaaaacaaaattctaaatatttataaggaccatttac 37438518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 25703920 - 25703985
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| ||||||||| |||||||  |||||||| |||||||| |||||||||||||||    
T  25703920 aaagtgtgattttattttatagggattaaaaataaaattatgaatatttacaaggatcatttactt 25703985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 28541021 - 28540956
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||||| |||| |||| ||||||| ||||||| | |||||||||||||| |||||||||    
T  28541021 aaagtatgattttattttgtagggattaaaaacaaaattctgaatatttataaggaccatttactt 28540956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 41309475 - 41309410
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||||| |||| |||| ||||||| ||||||| | |||||||||| ||| |||||||||    
T  41309475 aaagtatgattttattttgtagggattaaaaacaaaattcttaatatttatagggaccatttactt 41309410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 53163246 - 53163311
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||||| ||||||||  | ||||| ||||||||| |||||||||| ||| |||||||||    
T  53163246 aaagtatgattttattttatagagactaaaaacaaaattatgaatatttatagggaccatttactt 53163311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 48313689 - 48313748
Alignment:
Q  140 tgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||| |||| |||| | |||||| |||||| | ||||||||||||||||||||||||    
T  48313689 tgattttattttgtagggactaaaattaaaattctgaatatttataaggatcatttactt 48313748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 22284838 - 22284916
Alignment:
Q  121 ttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||| || ||||| |||||||  |||||||| ||||||| ||||||| | |||| ||| |||||||||||||||    
T  22284838 ttataggaactaaaaagtttgatttttatttatagggattaaaaacaaaattttgaatagttacaaggatcatttactt 22284916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 43563725 - 43563782
Alignment:
Q  142 attttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||||||| |||||  |||||| | |||||||||| |||||||||||||    
T  43563725 attttattttataggaactaaaaataaaattctaaatatttatagggatcatttactt 43563782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 25900846 - 25900781
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||||| ||||||||| | ||||| ||||||| | || |||||||||||||||||||||    
T  25900846 aaagtatgattttattttatagggactaaaaacaaaattctgaacatttataaggatcatttactt 25900781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 41432630 - 41432565
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| ||||||||||| ||||| ||||||| | |||||||||||||| |||||||||    
T  41432630 aaagtgtgattttattttataggaactaaaaacaaaattttgaatatttataaggaccatttactt 41432565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 43927736 - 43927816
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||| | |||| |||| |||||||| ||||||||| | |||||  |||||| | |||||||||| |||||||||||||    
T  43927736 ttttatagggattaaaaagcatgattttattttatagggactaaaaataaaattctgaatatttatagggatcatttactt 43927816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 11688049 - 11687970
Alignment:
Q  120 tttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    |||||| ||| || ||||| ||||||| |||| ||| ||||||||  |||||| | |||||||||| |||||||||||||    
T  11688049 tttataggaactaaaaagtgtgattttattttgtagaaattaaaaataaaattttgaatatttatagggatcatttactt 11687970  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 24861811 - 24861744
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactttt 201  Q
    ||||| ||||||| |||| |||| | ||||| ||||||||  |||||||||| |||||||||||||||    
T  24861811 aaagtttgattttattttgtagggactaaaaacaaaattacgaatatttatatggatcatttactttt 24861744  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 24861883 - 24861949
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaat-caaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| |||||||| ||||||||  ||||||| | |||||||||| |||||||||||||    
T  24861883 aaagtgtgattttattttatagaaattaaaaaacaaaattctgaatatttatagggatcatttactt 24861949  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 39727762 - 39727827
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||| ||||| |||| |||||| ||||| ||||||| | |||||||||| | |||||||||||    
T  39727762 aaagtataattttattttgtaggaactaaaaacaaaattctgaatatttataggaatcatttactt 39727827  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 33940491 - 33940571
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||| ||| || ||||||||||||| |||| |||| | ||||| ||||||| | ||||||||||| || ||| |||||    
T  33940491 ttttataggaactaaaaagtatgattttattttgtagggactaaaaacaaaattctaaatatttataaagaccatctactt 33940571  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 18559439 - 18559519
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||| || ||||||||||||| ||||||||| | ||||| ||||||| | |||||||| |||||  ||||||||    
T  18559439 ttttataagaactaaaaagtatgattttattttataggtactaaaaacaaaattctgaatatttacaaggacaatttactt 18559519  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 7466478 - 7466543
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| ||||||| ||||||| | | ||||| ||||||| | |||||||||||||| |||||||||    
T  7466478 aaagtgtgattttattttataaggactaaaaacaaaattctaaatatttataaggaccatttactt 7466543  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 2692832 - 2692907
Alignment:
Q  115 aattttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggat 190  Q
    |||||||||||| |||||  |||||||||||| |||| |||||||||||| ||| | ||| |||||||||| ||||    
T  2692832 aattttttataaaaattaagaagtatgattttattttgtaggaattaaaaacaagaatataaatatttatagggat 2692907  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 33566884 - 33566814
Alignment:
Q  115 aattttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttata 185  Q
    |||||||||||  ||||| ||||| ||||||| ||||||||| ||||||| ||||||| | ||||||||||    
T  33566884 aattttttatagaaattaaaaagtgtgattttattttatagggattaaaaacaaaattttaaatatttata 33566814  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 25696101 - 25696160
Alignment:
Q  9 aaccacctaaacacatgataccatatctggtctaaaaaaggacatctaataaaaaggtga 68  Q
    ||||||||||||||||||||||| | |||  ||||||||||||||| || ||||| ||||    
T  25696101 aaccacctaaacacatgataccacacctgacctaaaaaaggacatccaacaaaaatgtga 25696160  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 10023746 - 10023692
Alignment:
Q  9 aaccacctaaacacatgataccatatctggtctaaaaaaggacatctaataaaaa 63  Q
    |||||||||| ||| |||||||| | ||||||||||||||| ||||||| |||||    
T  10023746 aaccacctaagcacgtgataccacacctggtctaaaaaagggcatctaaaaaaaa 10023692  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 34340644 - 34340606
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaatt 172  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  34340644 aaagtatgattttattttataggaattaaaaacaaaatt 34340606  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 2730383 - 2730464
Alignment:
Q  118 tttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    |||||||| ||| || ||||| ||||||| |||| || | |||||||  |||||| | ||||||||||||||| ||||||||    
T  2730383 tttttataggaactaaaaagtgtgattttattttgtaaggattaaaaataaaattctgaatatttataaggatgatttactt 2730464  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 42639990 - 42640047
Alignment:
Q  142 attttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||| |||| |||||| ||||| ||||||||| |||||||||| | |||||||||||    
T  42639990 attttattttgtaggaactaaaaacaaaattatgaatatttataggaatcatttactt 42640047  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 45967389 - 45967473
Alignment:
Q  115 aattttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||| | | || ||||||||||||| |||| |||| | ||||| ||||||| | |||||||||| |||  ||||||||    
T  45967389 aattttttatagggactaaaaagtatgattttattttgtagggactaaaaacaaaattctgaatatttatagggactatttactt 45967473  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 145007 - 144927
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||| | || ||||| | ||||| |||| |||||||||||| ||||||| | ||||||||||  ||||||||||||    
T  145007 ttttataaggactaaaaagtgtaattttattttttaggaattaaaaacaaaattctgaatatttatagagatcatttactt 144927  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 2047039 - 2046987
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataa 186  Q
    ||||||||||||| |||| |||||||||||| ||||||| | |||||||||||    
T  2047039 aaagtatgattttattttgtaggaattaaaaacaaaattgtgaatatttataa 2046987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 18278928 - 18278862
Alignment:
Q  119 ttttataagaattacaaagtatgattttcttttataggaattaaaatcaaaattatcaatatttata 185  Q
    ||||||||| |||| ||||||||||||| |||| |||| | ||||| ||||||| | ||||||||||    
T  18278928 ttttataaggattaaaaagtatgattttattttgtagggactaaaaacaaaattctaaatatttata 18278862  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 53421 - 53356
Alignment:
Q  134 aaagtatgattttcttttataggaattaaaatcaaaattatcaatatttataaggatcatttactt 199  Q
    ||||||||||||| |||| |||||| ||||| ||||||| | |||||||||| | | |||||||||    
T  53421 aaagtatgattttattttgtaggaactaaaaacaaaattctaaatatttataggtaccatttactt 53356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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