View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_52 (Length: 351)
Name: NF18674_high_52
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24054100 - 24053766
Alignment:
| Q |
1 |
tacaattgagaccgtacgtacgtattagtcaatttgactacaattttcaacggtactactcaattgagacggtatcgggtagcaatgccacaagcaaggg |
100 |
Q |
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| T |
24054100 |
tacaattgagaccgtacgtacgtattagtcaatttgactacaattttcaacggtactactcaattgagacggtatcaggtagcaatgccacaag----gg |
24054005 |
T |
|
| Q |
101 |
tcacataacattataagaaactgtgaatacttggaaaacttcaaagtgtggacaaagtaatccctaatcttaatttgagaattaaaaaagcataacattt |
200 |
Q |
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| T |
24054004 |
tcacataacattataagaaactgtgaatacttggaaaacttctaagcgtgaacaaagtgatccccaatcttaatttgagaattaaaaaagcataacattt |
24053905 |
T |
|
| Q |
201 |
tagtgtaaaatcccatttagtcttnnnnnnnnnntacgtttatcatcaacttggtcccatataaagtcattttatcaatttgattttctaaactcaaact |
300 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24053904 |
tagtgtaaaatcccatttagcctt-aaaaaaaaatacgtttatcatcaacttggtcccatataaagtcattttatcaatttaattttctaaactcaaact |
24053806 |
T |
|
| Q |
301 |
cccaacattttagcccatctatccaaattacaatgaagaa |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24053805 |
cccaacattttagcccatctatccaaattacaatgaagaa |
24053766 |
T |
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