View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_56 (Length: 344)
Name: NF18674_high_56
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 334
Target Start/End: Original strand, 23733039 - 23733297
Alignment:
| Q |
76 |
gataactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatgaatttgtggaatggtgccttctgtggtaatcg |
175 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
23733039 |
gataactaagacttcgttgtggtatttcaacttgttataacttagaaatataatttattgagcgaatgaatttggggaatggtgccttctgtggtgatcg |
23733138 |
T |
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| Q |
176 |
aatggtgcttgaaatatacgatgcatctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacac |
274 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
23733139 |
aatggtgcttgaaatataccatgcatctgtttcttttaattgttgagtatt-gttttacttcgtctatgttatggtgccttttcattgaggttatgacac |
23733237 |
T |
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| Q |
275 |
atggaatatgcgactaacaaggtatatgaatatggacctcagaaacctgtcttgatgatg |
334 |
Q |
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| T |
23733238 |
atggaatatgcgactaacaaggtaaatgaatatggaccttagaaacctctcttgatgatg |
23733297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 75 - 334
Target Start/End: Original strand, 23730166 - 23730424
Alignment:
| Q |
75 |
cgataactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatgaatttgtggaatggtgccttctgtggtaatc |
174 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |
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| T |
23730166 |
cgataactaagacttcgttgtggtatttcaactttttataacttagaaatataatttattgaccgtatgaatttgtggaatggtgccttctgtggtgatc |
23730265 |
T |
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| Q |
175 |
gaatggtgcttgaaatatacgatgcatctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcatt-gcgttatgaca |
273 |
Q |
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| T |
23730266 |
gaatggtgcttgaaatatac-atgcatctgtttcttttaattgctgagtatt-attttacttcttctattttatactgtcttttcattaaagttatgaca |
23730363 |
T |
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| Q |
274 |
catggaatatgcgactaacaaggtatatgaatatggacctcagaaacctgtcttgatgatg |
334 |
Q |
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| T |
23730364 |
catggaatatgcgactaacaaggtaaatgaatatggacctcagaaacctctcttgatgatg |
23730424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 79 - 334
Target Start/End: Complemental strand, 23779990 - 23779736
Alignment:
| Q |
79 |
aactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatgaatttgtggaatggtgccttctgtggtaatcgaat |
178 |
Q |
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| T |
23779990 |
aactaagaatacgttgtggtatttcaacttgttagaacttagaaatataatttattacatgaatgcatttgtggaatgatgtcttccgtggtgatggaat |
23779891 |
T |
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| Q |
179 |
ggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacac |
274 |
Q |
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||||||||||||||| ||| ||| ||| ||||||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||||| |
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| T |
23779890 |
ggtgcttgaaatataagatccatgtcctg-ttcttttaattgttgagtatt-atctta---cttctatgttatggtgtcttttcattgaggttatgacac |
23779796 |
T |
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| Q |
275 |
atggaatatgcgactaacaaggtatatgaatatggacctcagaaacctgtcttgatgatg |
334 |
Q |
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| T |
23779795 |
atggaatatgcgactaacaagatgaatgaatatggacctcagaaacctctcttgatgatg |
23779736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 79 - 334
Target Start/End: Complemental strand, 23866943 - 23866689
Alignment:
| Q |
79 |
aactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatgaatttgtggaatggtgccttctgtggtaatcgaat |
178 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||| ||||| || |||| |
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| T |
23866943 |
aactaagaatacgttgtggtatttcaacttgttagaacttagaaatataatttattacatgaatgcatttgtggaatgatgtcttccgtggtgatggaat |
23866844 |
T |
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| Q |
179 |
ggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacac |
274 |
Q |
| |
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||||||||||||||| ||| ||| ||| ||||||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||||| |
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| T |
23866843 |
ggtgcttgaaatataagatccatgtcctg-ttcttttaattgttgagtatt-atctta---cttctatgttatggtgtcttttcattgaggttatgacac |
23866749 |
T |
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| Q |
275 |
atggaatatgcgactaacaaggtatatgaatatggacctcagaaacctgtcttgatgatg |
334 |
Q |
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| T |
23866748 |
atggaatatgcgactaacaagatgaatgaatatggacctcagaaacctctcttgatgatg |
23866689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 23645574 - 23645798
Alignment:
| Q |
78 |
taactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatg---------aatttgtggaatggtgccttctgtg |
168 |
Q |
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||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||| | ||||| ||| ||| |||| |||||||| || |
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| T |
23645574 |
taactaagaatacgttgtggtatttcagcttgttagaacttagaaatatagtttattacgtgaatgcatatgtcgaatatgtcgaatagtgccttccatg |
23645673 |
T |
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| Q |
169 |
gtaatcgaatggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-c |
264 |
Q |
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|| || | ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||| |||| || || |||||||| | |
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| T |
23645674 |
gtgatggtatggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtatt-attttccttcttctttgttatgctgtcttttcatcgag |
23645772 |
T |
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| Q |
265 |
gttatgacacatggaatatgcgacta |
290 |
Q |
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|||||||||||||||| | ||||||| |
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| T |
23645773 |
gttatgacacatggaaaacgcgacta |
23645798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 23813000 - 23812776
Alignment:
| Q |
78 |
taactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttattgagcgaatg---------aatttgtggaatggtgccttctgtg |
168 |
Q |
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||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||| | ||||| ||| ||| |||| |||||||| || |
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| T |
23813000 |
taactaagaatacgttgtggtatttcagcttgttagaacttagaaatatagtttattacgtgaatgcatatgtcgaatatgtcgaatagtgccttccatg |
23812901 |
T |
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| Q |
169 |
gtaatcgaatggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-c |
264 |
Q |
| |
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|| || | ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||| |||| || || |||||||| | |
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| T |
23812900 |
gtgatggtatggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtatt-attttccttcttctttgttatgctgtcttttcatcgag |
23812802 |
T |
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| Q |
265 |
gttatgacacatggaatatgcgacta |
290 |
Q |
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|||||||||||||||| | ||||||| |
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| T |
23812801 |
gttatgacacatggaaaacgcgacta |
23812776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 23768299 - 23768242
Alignment:
| Q |
77 |
ataactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttatt |
134 |
Q |
| |
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|||||||||| | | ||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
23768299 |
ataactaagaatacattgcggtatttcaacttgttagaacttagaaatatgatttatt |
23768242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 23818147 - 23818090
Alignment:
| Q |
77 |
ataactaagacttcgttgtggtatttcaacttgttagaacttagaaatataatttatt |
134 |
Q |
| |
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|||||||||| | | ||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23818147 |
ataactaagaatacattgcggtatttcaacttgttagaacttagaaatatgatttatt |
23818090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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