View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_60 (Length: 339)
Name: NF18674_high_60
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_60 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 3111492 - 3111179
Alignment:
| Q |
11 |
cataggatcgatcattaaaaaacttgaactttcattatatctagcttaaaagtcatacaaataatagtttt-gatcgattgatagtgtcaaagttttaaa |
109 |
Q |
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| T |
3111492 |
cataggatcgatcattaaaaaactttaactttcattatatctagcttaaaagtcatacaaataatagtttttgatcgattgatagtgtaaaagttttaaa |
3111393 |
T |
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| Q |
110 |
ccagcacaaggaaaggaggtttaccagattgtcagcacaatggccatttgtcacattgcatcggcctcctccagaaattttcacctgcgaataaaaccat |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
3111392 |
ccagcacacggaaaggaggtttaccagattgtcagcacaatggccatttgtcacattgcatcggcctcctccagaaattttcacctacgaataataccat |
3111293 |
T |
|
| Q |
210 |
gagaagaagaacaaaacaaaagagaacaatgaaacagaaacatggaatacaatccaatagtaatatccacatgcaatcacagaccttggaaagaggcttc |
309 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3111292 |
cagaagaagaacaaaacaaaagagaacaacgaaacagaaacatggaatacaacccaatagtaatatccacatgcaatcgcagaccttggaaagaggcttc |
3111193 |
T |
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| Q |
310 |
cccttctcaataat |
323 |
Q |
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|||||||||||||| |
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| T |
3111192 |
cccttctcaataat |
3111179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 10513217 - 10513157
Alignment:
| Q |
20 |
gatcattaaaaaacttgaactttcattatatctagcttaaaagtcatacaaataatagttt |
80 |
Q |
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| T |
10513217 |
gatcattaaaaaagtttgactttcatcatatctaacttaaaagtcatacaaatgatagttt |
10513157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 1206595 - 1206551
Alignment:
| Q |
37 |
aactttcattatatctagcttaaaagtcatacaaataatagtttt |
81 |
Q |
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||||||||| ||||||| ||||||||||||| ||| ||||||||| |
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| T |
1206595 |
aactttcataatatctaacttaaaagtcatataaacaatagtttt |
1206551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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