View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_61 (Length: 338)
Name: NF18674_high_61
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 83 - 322
Target Start/End: Original strand, 13651344 - 13651586
Alignment:
| Q |
83 |
acaaacactataaaatgctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatc |
182 |
Q |
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| T |
13651344 |
acaaacactataaaaagctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatc |
13651443 |
T |
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| Q |
183 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtaca |
282 |
Q |
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| T |
13651444 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaataca |
13651543 |
T |
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| Q |
283 |
tccacaacagactcattaatttgaa---tgatgatgttaaatc |
322 |
Q |
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| T |
13651544 |
tccacaacagactcattagtttgaatattgatgatgttaaatc |
13651586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 13646354 - 13646433
Alignment:
| Q |
171 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaa |
250 |
Q |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaa |
13646433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 13656680 - 13656759
Alignment:
| Q |
171 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaa |
250 |
Q |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaa |
13656759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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