View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_high_62 (Length: 333)
Name: NF18674_high_62
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 31127705 - 31127397
Alignment:
| Q |
10 |
catcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcac |
109 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127705 |
catcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcac |
31127606 |
T |
|
| Q |
110 |
cctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127605 |
cctccaccctttcttcactaaagttccatccggcaaaacgtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctca |
31127506 |
T |
|
| Q |
210 |
cataaagccgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127505 |
cataaagccgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgac |
31127406 |
T |
|
| Q |
310 |
tatgcttag |
318 |
Q |
| |
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||||||||| |
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| T |
31127405 |
tatgcttag |
31127397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 31078387 - 31078079
Alignment:
| Q |
10 |
catcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcac |
109 |
Q |
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|||| ||| |||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
31078387 |
catcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgaccttcccatagcatatatatgatacgccac |
31078288 |
T |
|
| Q |
110 |
cctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcg |
209 |
Q |
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||||||||||||||||| ||||||||||| |||||||| || | | || ||||| ||| |||||| ||||| |||||||| ||||||||||||||| |
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| T |
31078287 |
tctccaccctttcttcacaaaagttccatctggcaaaacatcattgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcg |
31078188 |
T |
|
| Q |
210 |
cataaagccgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgac |
309 |
Q |
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||||| | ||||||||| |||||||||||||||||||||| |||| |||| |||| |||||||| ||| || || ||||| |||||||||||||||| |
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| T |
31078187 |
cataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgac |
31078088 |
T |
|
| Q |
310 |
tatgcttag |
318 |
Q |
| |
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||||||||| |
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| T |
31078087 |
tatgcttag |
31078079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 31132399 - 31132105
Alignment:
| Q |
24 |
ctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttct |
123 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||| | || |||||||||||| |
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| T |
31132399 |
ctcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttct |
31132300 |
T |
|
| Q |
124 |
tcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcgcataaagccgcatg |
223 |
Q |
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||||||| |||||||| |||||||| || || | || ||||||||| ||||||| | ||| ||||| | || |||||||||||||||||| | ||||| |
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| T |
31132299 |
tcactaatgttccatctggcaaaacatcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatg |
31132200 |
T |
|
| Q |
224 |
agtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgactatgcttag |
318 |
Q |
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|||||||||||||| ||||||||||| || | |||| | ||||||| ||| || || |||||||||||||| |||||||||||||||| |
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| T |
31132199 |
agtgtaaaccatattcttcacctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttag |
31132105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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