View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_high_64 (Length: 323)
Name: NF18674_high_64
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_high_64 |
 | |
|
| [»] scaffold1063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 301
Target Start/End: Original strand, 6939631 - 6939870
Alignment:
| Q |
64 |
taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttc |
161 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6939631 |
taccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcactttgagaactaaggcaggtgttcaatttgttc |
6939730 |
T |
|
| Q |
162 |
ttttttcatcagtctttaattcagcgagagatttgaaattgaaaccatattgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtat |
261 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
6939731 |
ttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtat |
6939830 |
T |
|
| Q |
262 |
cctattgcttcatccaaacctacaacatatcgtagcaaca |
301 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6939831 |
ccgtatgcttcatccaaacctacaatatatggtagcaaca |
6939870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 301
Target Start/End: Original strand, 6942806 - 6943045
Alignment:
| Q |
64 |
taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttc |
161 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
6942806 |
taccctctttgaactttgaatttttttctttatcatcatctactcatctttcctccaattcttatcactttgagaactaaggcaggtgtaaaatttgttc |
6942905 |
T |
|
| Q |
162 |
ttttttcatcagtctttaattcagcgagagatttgaaattgaaaccatattgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtat |
261 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6942906 |
ttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtat |
6943005 |
T |
|
| Q |
262 |
cctattgcttcatccaaacctacaacatatcgtagcaaca |
301 |
Q |
| |
|
|| ||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
6943006 |
ccgtatgcttcatccaaagctacaatatatggtagcaaca |
6943045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 6787849 - 6787696
Alignment:
| Q |
109 |
ctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttcttttttcatcagtctttaattcagcgagagatttgaaattgaaacca |
208 |
Q |
| |
|
||||||| | |||||||||| |||| |||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6787849 |
ctttccttcaattcttatcagtttgggaacataggcaagtgttcaatttgttctcgcttaatcagtcttcaattcagcgagagatttgcaattgaaacca |
6787750 |
T |
|
| Q |
209 |
tattgtcgacgacttgaagc--aaacatggcatctttccataagcatcacagta |
260 |
Q |
| |
|
|||||||||| |||| || | ||| |||||||| ||||||||||||||||||| |
|
|
| T |
6787749 |
tattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 6787995 - 6787945
Alignment:
| Q |
14 |
catcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgata |
65 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6787995 |
catcacccctgaaccataccccc-agtcgccattacacaacaaactatgata |
6787945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 6939549 - 6939601
Alignment:
| Q |
14 |
catcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgatacc |
67 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
6939549 |
catcaaccgtgaaccgtacccc-cagtcgccatcacgcaacaaactatgatacc |
6939601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 6942724 - 6942776
Alignment:
| Q |
14 |
catcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgatacc |
67 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
6942724 |
catcaaccctgaaccgtacccc-cagtcgccatcatgcaacaaactatgatacc |
6942776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 3102 - 3029
Alignment:
| Q |
233 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatcgtagcaacattttg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3102 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttg |
3029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University