View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_high_83 (Length: 245)

Name: NF18674_high_83
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_high_83
NF18674_high_83
[»] chr4 (4 HSPs)
chr4 (1-132)||(28607390-28607521)
chr4 (1-132)||(28612152-28612283)
chr4 (134-240)||(14177853-14177959)
chr4 (134-240)||(28607914-28608020)
[»] chr1 (1 HSPs)
chr1 (1-132)||(34906756-34906887)
[»] chr6 (1 HSPs)
chr6 (1-132)||(2308760-2308891)
[»] chr8 (5 HSPs)
chr8 (134-240)||(12934583-12934689)
chr8 (4-70)||(17121733-17121801)
chr8 (1-70)||(17123887-17123958)
chr8 (76-132)||(12930336-12930390)
chr8 (76-132)||(12935082-12935136)
[»] chr7 (1 HSPs)
chr7 (134-240)||(15300369-15300475)
[»] chr2 (1 HSPs)
chr2 (1-132)||(8538835-8538966)
[»] chr3 (1 HSPs)
chr3 (60-132)||(51298526-51298598)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 28607390 - 28607521
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607390 caccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 28607489  T
Q  101 gctggaaacaatacccacacgtggtggggcca 132  Q
    ||||||||||||||||||||||||||||||||    
T  28607490 gctggaaacaatacccacacgtggtggggcca 28607521  T

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Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 28612152 - 28612283
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612152 caccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 28612251  T
Q  101 gctggaaacaatacccacacgtggtggggcca 132  Q
    ||||||||||||||||||||||||||||||||    
T  28612252 gctggaaacaatacccacacgtggtggggcca 28612283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 14177959 - 14177853
Alignment:
Q  134 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14177959 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc 14177860  T
Q  234 atctgtg 240  Q
    |||||||    
T  14177859 atctgtg 14177853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 28607914 - 28608020
Alignment:
Q  134 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  28607914 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatcagc 28608013  T
Q  234 atctgtg 240  Q
    |||||||    
T  28608014 atctgtg 28608020  T

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Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34906887 - 34906756
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906887 caccgtaagctataccatagctttcctatttgtagaaaaattcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 34906788  T
Q  101 gctggaaacaatacccacacgtggtggggcca 132  Q
    ||||||||||||||||||||||||||||||||    
T  34906787 gctggaaacaatacccacacgtggtggggcca 34906756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2308891 - 2308760
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 100  Q
    |||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308891 caccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttg 2308792  T
Q  101 gctggaaacaatacccacacgtggtggggcca 132  Q
    ||||||||||||||||||||||||||||||||    
T  2308791 gctggaaacaatacccacacgtggtggggcca 2308760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 12934689 - 12934583
Alignment:
Q  134 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12934689 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc 12934590  T
Q  234 atctgtg 240  Q
    |||||||    
T  12934589 atctgtg 12934583  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
Q  4 cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact 70  Q
    ||||||||||  |||| ||||||||||||||||  ||||||| |||||||||||||||  |||||||||    
T  17121801 cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact 17121733  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17123958 - 17123887
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaagact 70  Q
    |||| |||||||||  |||| |||||||||||||||||  ||||| |||||||||||||||  |||||||||    
T  17123958 caccttaagctatactatagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaagact 17123887  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 12930390 - 12930336
Alignment:
Q  76 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca 132  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||||||||||||    
T  12930390 caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca 12930336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 12935136 - 12935082
Alignment:
Q  76 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca 132  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||||||||||||    
T  12935136 caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca 12935082  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 15300475 - 15300369
Alignment:
Q  134 atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc 233  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  15300475 atttttgcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatccgc 15300376  T
Q  234 atctgtg 240  Q
    || ||||    
T  15300375 atatgtg 15300369  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8538966 - 8538835
Alignment:
Q  1 caccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtcttt 99  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||| || ||| || ||||||||||||||    
T  8538966 caccttaagctataccatagctttcctatttgtagaaaaatgcatcattgcattaaatgagtagaagactagttataatttatttatagtaattgtcttt 8538867  T
Q  100 ggctggaaacaatacccacacgtggtggggcca 132  Q
    |||||| |||| |||||||| ||||||||||||    
T  8538866 ggctgg-aacagtacccacatgtggtggggcca 8538835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 51298598 - 51298526
Alignment:
Q  60 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca 132  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||    
T  51298598 ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggcca 51298526  T

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