View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_1 (Length: 833)

Name: NF18674_low_1
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_1
NF18674_low_1
[»] chr1 (8 HSPs)
chr1 (19-562)||(46167559-46168102)
chr1 (594-823)||(46168138-46168368)
chr1 (79-242)||(2660564-2660731)
chr1 (774-815)||(46161505-46161546)
chr1 (159-265)||(8133643-8133751)
chr1 (499-541)||(46161283-46161325)
chr1 (79-109)||(8133590-8133620)
chr1 (529-562)||(46182984-46183017)
[»] chr7 (1 HSPs)
chr7 (64-268)||(28006767-28006973)
[»] chr4 (2 HSPs)
chr4 (159-283)||(32057395-32057520)
chr4 (79-257)||(26475024-26475204)
[»] chr8 (2 HSPs)
chr8 (157-235)||(15075033-15075113)
chr8 (164-235)||(15065736-15065809)
[»] chr3 (3 HSPs)
chr3 (100-236)||(24991707-24991844)
chr3 (157-222)||(35532759-35532827)
chr3 (157-268)||(12220932-12221043)
[»] chr5 (1 HSPs)
chr5 (81-134)||(17245933-17245986)


Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 46167559 - 46168102
Alignment:
Q  19 tagaatactatattgatgaaatactactttattttactatattgatgttgtttgctgtcttgagaaggtgaggtgttgttgttaggggttttagtgggag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46167559 tagaatactatattgatgaaatactactttattttactatattgatgttgtttgctgtcttgagaaggtgagctgttgttgttaggggttttagtgggag 46167658  T
Q  119 tgatggttttttggagcgaccttggtgtgaaaagtagtcgataggtgtttgaattttgtttttggtcatttacgatggagtgtaaggttttgaatcaact 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  46167659 tgatggttttttggagcgaccttggtgtgagaagtagtcgataggtgtttgatttttgtttgtggtcatttacgatggagtgtaaggttttgaatcaact 46167758  T
Q  219 tttggtttatgttggttttgtgggtgtttatcttggtttaggtgttgattagaatttgaaggtttannnnnnnattcgtgtttaagatgtacatgcattt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||    
T  46167759 tttggtttatgttggttttgtgggtgtttatcttggtttaggtgttgattagaatttggaggtttatttttttattcgtgtttaagatgtacatgcattt 46167858  T
Q  319 tcttttagatgttcctcctgtatacggcaccattgctatgtagtttctatcggtccctgttcatcttttgcaggttctttgttattaataaattttgctg 418  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46167859 tcttttggatgttcctcctatatacggcaccattgctatgtagtttctatcggtccctgttcatcttttgcaggtactttgttattaataaattttgctg 46167958  T
Q  419 ttaaaaaagagagtaacaatcaacatgtacatgatacataacatgtattcataaaaactagtttgaaatttcagatttcttttacttcttatttatttat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46167959 ttaaaaaagagagtaacaatcaacatgtacatgatacataacatgtattcataaaaactagtttgaaatttcagatttcttttacttcttatttatttat 46168058  T
Q  519 ggaaaatatcatggaaaatgtggggacctcaatctcatatttac 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46168059 ggaaaatatcatggaaaatgtggggacctcaatctcatatttac 46168102  T

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Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 594 - 823
Target Start/End: Original strand, 46168138 - 46168368
Alignment:
Q  594 aacacacaattgcaattgaagataaacatgtagataaaaatagaagatcaaaatcacattctacggcgatatttgaacaataagtgtaattaagactann 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  46168138 aacacacaattgcaattgaagataaacatgtagataaaaatagaagatcaaaatcacattctacggcgatatttgaacaataagtgtaattaagactatt 46168237  T
Q  694 nnnnnatgcaattaaaataattaaattgtgtgactaagtgatt-ctttaccaagtaacaacttccacaaagaaagcttccaattccaattccaccaagga 792  Q
         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46168238 tttttatgcaattaaaataattaaattgtgtgactaagtgattcctttaccaagtaacaacttccacaaagaaagcttccaattccaattccaccaagga 46168337  T
Q  793 accactttcatgatggaactgttgatctgtg 823  Q
    |||||||||||||||||||||||||||||||    
T  46168338 accactttcatgatggaactgttgatctgtg 46168368  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 2660731 - 2660564
Alignment:
Q  79 tgagaaggtgaggtgttgttgttagggg--ttttagtgggagtgatggttttttggagcgaccttggtgtgaaaagtagtcgataggtgtttgaattttg 176  Q
    ||||||||||| ||| ||||||||||||  |||||||||| || ||||||||||||||   | |||||||||  |||||  |||  ||||||| ||||||    
T  2660731 tgagaaggtgatgtgctgttgttaggggggttttagtgggtgtaatggttttttggagtagctttggtgtgagtagtaggtgatgagtgtttggattttg 2660632  T
Q  177 tt--tttggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtggg 242  Q
    ||  | ||| | || || ||||||||| |  |||||   |||||||||||||||||||||||||||||    
T  2660631 tttatgtggcccttcacaatggagtgtgaaattttggcgcaacttttggtttatgttggttttgtggg 2660564  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 774 - 815
Target Start/End: Original strand, 46161505 - 46161546
Alignment:
Q  774 attccaattccaccaaggaaccactttcatgatggaactgtt 815  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46161505 attccaattccaccaaggaaccactttcatgatggaactgtt 46161546  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 8133643 - 8133751
Alignment:
Q  159 ataggtgtttgaattttgtttttg--gtcatttacgatggagt-gtaaggttttgaatcaacttttggtttatgttggttttgtgggtgtttatcttggt 255  Q
    ||||||||||||||||||||||||  | |||| | |||| ||| || ||||||||  ||||||||||||||||||||| |||||||| | ||| ||||||    
T  8133643 ataggtgtttgaattttgtttttgtggccattcatgatgaagttgtgaggttttggctcaacttttggtttatgttgg-tttgtgggggcttaacttggt 8133741  T
Q  256 ttaggtgttg 265  Q
    || |||||||    
T  8133742 tttggtgttg 8133751  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 46161283 - 46161325
Alignment:
Q  499 tttacttcttatttatttatggaaaatatcatggaaaatgtgg 541  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  46161283 tttacttcttatttatttatggaaactatcattgaaaatgtgg 46161325  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 8133590 - 8133620
Alignment:
Q  79 tgagaaggtgaggtgttgttgttaggggttt 109  Q
    |||||||||||||||||||||||||||||||    
T  8133590 tgagaaggtgaggtgttgttgttaggggttt 8133620  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 46182984 - 46183017
Alignment:
Q  529 atggaaaatgtggggacctcaatctcatatttac 562  Q
    |||||||||||||||||||||||||||| |||||    
T  46182984 atggaaaatgtggggacctcaatctcatctttac 46183017  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 28006767 - 28006973
Alignment:
Q  64 tgttgtttgctgtcttgagaaggtgaggtgttgttgttaggggttttagtgggagtgatggttttttggagcgaccttggtgtgaaaagtagtcgatagg 163  Q
    |||||||||  || ||||||||||||||| |||||||||||||||| || ||| |||||| |||| | ||| | | |||||||||  ||  |  ||||||    
T  28006767 tgttgtttgtggtgttgagaaggtgaggtattgttgttaggggtttgagcgggtgtgatgattttcttgagtggctttggtgtgagtagcgggtgatagg 28006866  T
Q  164 tgtttgaattttgtt--tttggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgggtgtttatcttggtttaggt 261  Q
    |||||||||||||||  | ||| |||| | || ||||||||||||||||  |||  ||||||||||||||||||   | || ||||| ||||||||  ||    
T  28006867 tgtttgaattttgtttatgtggccattcatgagggagtgtaaggttttggctcacattttggtttatgttggttgcataggagtttaacttggttttcgt 28006966  T
Q  262 gttgatt 268  Q
    |||||||    
T  28006967 gttgatt 28006973  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 32057395 - 32057520
Alignment:
Q  159 ataggtgtttgaattttgtttttg--gtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgggtgtttatcttggtt 256  Q
    |||| |||||||||||| |||| |  |||||| |||||||||||| ||||||||  ||||||||||||||||||| | ||||| || ||||| ||| |||    
T  32057395 atagttgtttgaattttattttcgttgtcattcacgatggagtgtgaggttttgcctcaacttttggtttatgtttg-tttgttggggtttaacttagtt 32057493  T
Q  257 taggtgttgattagaatttgaaggttt 283  Q
    | |||||||||| || |||| ||||||    
T  32057494 ttggtgttgatttgattttggaggttt 32057520  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 26475024 - 26475204
Alignment:
Q  79 tgagaaggtgaggtgttgttgttaggggtttt-agtgggagtgatggttttttg-gagcgaccttggtgtgaaaagtagtcgataggtgtttgaattttg 176  Q
    |||||||  |||||||||||||| ||| |||| |||||| ||| |||||||||  ||| | | ||| |||||| |  || ||||||||||||| ||||||    
T  26475024 tgagaagacgaggtgttgttgtttgggttttttagtgggtgtgttggtttttttagagtggctttgatgtgaatatcaggcgataggtgtttggattttg 26475123  T
Q  177 ttttt--ggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgggtgtttatcttggttt 257  Q
     || |  || |||| |||||||||||| ||  ||||| |||||||||||||||||||   ||||| || ||||| ||||||||    
T  26475124 attctatggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtaggggtttagcttggttt 26475204  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 15075113 - 15075033
Alignment:
Q  157 cgataggtgtttgaattttgtttttg--gtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggtt 235  Q
    |||||| |||||||||||||||| ||  || ||||||||| |||||||||||||||  | |||||||||||||||||||||    
T  15075113 cgatagctgtttgaattttgtttatgtggttatttacgatagagtgtaaggttttggctgaacttttggtttatgttggtt 15075033  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 15065809 - 15065736
Alignment:
Q  164 tgtttgaattttgtt--tttggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggtt 235  Q
    |||||||||||||||  | |||| ||||| ||| |||||||||||||||  |||||||||||||||||||||||    
T  15065809 tgtttgaattttgttaatgtggttatttaagatagagtgtaaggttttggctcaacttttggtttatgttggtt 15065736  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 24991844 - 24991707
Alignment:
Q  100 ttaggggttttagtgggagtgatggtt-ttttggagcgaccttggtgtgaaaagtagtcgataggtgtttgaattttgtttt--tggtcatttacgatgg 196  Q
    |||||||||| |||||| ||||||||| ||||||||||   ||||||||| |||  | |||||||| |||| ||||||||||  ||  |||| ||| |||    
T  24991844 ttaggggtttcagtgggtgtgatggtttttttggagcggatttggtgtgagaagcggacgataggtatttggattttgtttttgtgcccattcacgttgg 24991745  T
Q  197 agtgtaaggttttgaatcaacttttggtttatgttggttt 236  Q
    || || | ||||||   |||||||||||||||||||||||    
T  24991744 agggtgatgttttg--gcaacttttggtttatgttggttt 24991707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 35532827 - 35532759
Alignment:
Q  157 cgataggtgtttgaattttgtttttg--gtcatttacgatgga-gtgtaaggttttgaatcaacttttg 222  Q
    |||||| |||||||||||| ||||||  ||||||||||||||| |||| ||||||||| ||||||||||    
T  35532827 cgatagttgtttgaattttatttttgtagtcatttacgatggaggtgtgaggttttgactcaacttttg 35532759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 12220932 - 12221043
Alignment:
Q  157 cgataggtgtttgaattttgtttttg--gtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgggtgtttatcttgg 254  Q
    ||||| ||||||| ||||||||||||  |||||| | |||||| ||| || ||  || |||||||||||||||||||   ||||| || ||||| |||||    
T  12220932 cgatatgtgtttggattttgtttttgtggtcattcaagatggattgtgagctt--gactcaacttttggtttatgtttagtttgtaggggtttagcttgg 12221029  T
Q  255 tttaggtgttgatt 268  Q
    ||| ||||||||||    
T  12221030 ttttggtgttgatt 12221043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 17245933 - 17245986
Alignment:
Q  81 agaaggtgaggtgttgttgttaggggttttagtgggagtgatggttttttggag 134  Q
    |||||||||||||  ||||||||||||||| || |  |||||||||||||||||    
T  17245933 agaaggtgaggtgacgttgttaggggttttggtcgatgtgatggttttttggag 17245986  T

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