View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_10 (Length: 651)
Name: NF18674_low_10
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 544
Target Start/End: Complemental strand, 44841878 - 44841330
Alignment:
| Q |
20 |
atcatttcataa--gcattataatatataggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgaga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841878 |
atcatttcataatagcattataatatataggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgaga |
44841779 |
T |
|
| Q |
118 |
gatgaatatga----------------------atgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcat |
195 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841778 |
gatgaatatgatttcctgcgtgtgtacctgtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcat |
44841679 |
T |
|
| Q |
196 |
gtatatctgtgttcttcttgtagttttgctacttagatcgtgaggtggaaccgagggaggttgatgctgatgaatgtggaacaaggccttccatatactg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44841678 |
gtatatctgtgttcttcttgtagttttgctacttagatcgtgaggtggaactgagggaggttgatgccgatgaatgtggaacaaggccttccatatactg |
44841579 |
T |
|
| Q |
296 |
atgatgttaccttatggccaataatgtgtcctaacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtatgttatcacctctc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44841578 |
atgatgttaccttatggccaataatgtgtcctaacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtgtgttatcacctctc |
44841479 |
T |
|
| Q |
396 |
acaaacctcactactctgtgtgtaatgctatgacgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgatgtatatcaaaatg |
495 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841478 |
acaaacctcacaactctgtgtgtaatgctataacgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgatgtatatcaaaatg |
44841379 |
T |
|
| Q |
496 |
gcatgtacaatattcaatgttgttcattcatctggttgctttcaaaatt |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841378 |
gcatgtacaatattcaatgttgttcattcatctggttgctttcaaaatt |
44841330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 574 - 638
Target Start/End: Complemental strand, 44841332 - 44841268
Alignment:
| Q |
574 |
atttgttggatacatgcatttcaagtttaggacgacgagatgtgtcaattttggaagaaagtttt |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841332 |
atttgttggatacatgcatttcaagtttaggacgacgagatgtgtcaattttggaagaaagtttt |
44841268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University