View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_110 (Length: 204)
Name: NF18674_low_110
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_110 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28607124 - 28607327
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgcttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
28607124 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgcttt |
28607223 |
T |
|
| Q |
101 |
ccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
28607224 |
ccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtga |
28607323 |
T |
|
| Q |
201 |
aact |
204 |
Q |
| |
|
|||| |
|
|
| T |
28607324 |
aact |
28607327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28611886 - 28612089
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgcttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
28611886 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgcttt |
28611985 |
T |
|
| Q |
101 |
ccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
28611986 |
ccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtga |
28612085 |
T |
|
| Q |
201 |
aact |
204 |
Q |
| |
|
|||| |
|
|
| T |
28612086 |
aact |
28612089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14178738 - 14178646
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttca |
93 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14178738 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttca |
14178646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14173984 - 14173892
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttca |
93 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
14173984 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaaactttgtattttcacttctgcttca |
14173892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11104516 - 11104424
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatg |
96 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||| | ||||||||||||||| |
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|
| T |
11104516 |
ttttcctacactctctggatttactcaacactctattttttctctcacacacttcta--cacatagaagctttgtatt-tgacttctgcttcaatg |
11104424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 44161633 - 44161538
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcacttctgcttcaatgc |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| ||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
44161633 |
ttttcccacactctctggatttactcaacactctattattcctctcacacacctct--acacacagaagctttgtgtttttcacttctgcttcgatgc |
44161538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37040744 - 37040927
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgcttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37040744 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatgcttt |
37040843 |
T |
|
| Q |
101 |
ccttcaattccattgcctctatttataggggaaatg-agccgtaagagttggatttggttcacacactcttacaccaaaagtca |
183 |
Q |
| |
|
|||||| | ||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37040844 |
ccttcactatcattgtctctatttataagagaaatgaagccgtaagagttggatttggttcacacactcttacactaaaagtca |
37040927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 15302960 - 15302891
Alignment:
| Q |
32 |
tctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgctttc |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
15302960 |
tctatttttgctctcacacacttctacacacacagaagctttgtattttcaattctgcttcgatgctttc |
15302891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 12099038 - 12098958
Alignment:
| Q |
13 |
ctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaat |
95 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | ||||| ||||||||| |||| || ||||||| | |||||||| ||||||| |
|
|
| T |
12099038 |
ctctgaatttactcaacactctatttttcctttcacatacttctaca--cacaaaaactttgtagtttcacttctacttcaat |
12098958 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8539230 - 8539029
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgcttt |
100 |
Q |
| |
|
||||||||||||||||| ||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8539230 |
ttttcccacactctctgaatttactgaacactatatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgcttt |
8539131 |
T |
|
| Q |
101 |
ccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtga |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8539130 |
ccttcaattcca-tgcctctatttataggggaaataagccataagagttggaaatagttcacac-ctcttacaccaaaagtcatgacattcagagtgtga |
8539033 |
T |
|
| Q |
201 |
aact |
204 |
Q |
| |
|
|||| |
|
|
| T |
8539032 |
aact |
8539029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 34907056 - 34906950
Alignment:
| Q |
98 |
tttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtg |
197 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34907056 |
tttctttcaattctattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtg |
34906957 |
T |
|
| Q |
198 |
tgaaact |
204 |
Q |
| |
|
||||||| |
|
|
| T |
34906956 |
tgaaact |
34906950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34907186 - 34907092
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaat |
95 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34907186 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaat |
34907092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12930723 - 12930629
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaat |
95 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12930723 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaat |
12930629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12935469 - 12935375
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaat |
95 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12935469 |
ttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaat |
12935375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 17124139 - 17124021
Alignment:
| Q |
84 |
ttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtca |
183 |
Q |
| |
|
|||| |||| ||||||||||||| | |||||| ||||||||||| | ||| ||||||||||||| || || ||||||| | ||||||||||||||||| |
|
|
| T |
17124139 |
ttctacttcgatgctttccttcattgccattgactctatttataaga-aaacaagccgtaagagtttgaattagttcaca-attcttacaccaaaagtca |
17124042 |
T |
|
| Q |
184 |
tggtattcaaagtgtgaaact |
204 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
17124041 |
taacattcaaagtgtgaaact |
17124021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42911307 - 42911408
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcacttctgcttcaatgctt |
99 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
42911307 |
tttttccacactctctggatttactcaacactctattttttctctcacacacttctacacacacagaagctttgtgtttttcacttctgcttcgatgctt |
42911406 |
T |
|
| Q |
100 |
tc |
101 |
Q |
| |
|
|| |
|
|
| T |
42911407 |
tc |
42911408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29107193 - 29107291
Alignment:
| Q |
1 |
ttttcccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatgcttt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
29107193 |
ttttcccacactctctggatttactcaacact--attttttctctcacacacttctacatacagagaagctttgtatttccacttctgcttcgatgcttt |
29107290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 51302203 - 51302118
Alignment:
| Q |
6 |
ccacactctctggatttattcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgctt |
91 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
51302203 |
ccacactctctggatttactcaatactctatttttcctcacacacacttctacacacacagaagctttgtattttcacttatgctt |
51302118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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