View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_12 (Length: 644)
Name: NF18674_low_12
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 10 - 627
Target Start/End: Complemental strand, 46773692 - 46773076
Alignment:
| Q |
10 |
agatgaagtcagtaaataagcttgattcaaaaagagtggccgacaattttagtaaaagtaggggagatattatggcatgttattttttgaaaattctcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46773692 |
agatgaagtcagtaaataagcttgattcaaaaagagtggccgactattttagtaaaagtaggggagatattatggcatgttattttttgaaaattctcat |
46773593 |
T |
|
| Q |
110 |
attgaatttattcataacatgcaaatgtgaccgcttacgcgttagcaatatagcctcgttttcagctaattcctaaatttatgtcgatttagcaaaaata |
209 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |
|
|
| T |
46773592 |
attaaatttattcagaacatgcaaatgtggccgcttacgcgttagcaatatagcctcgttttcaactaactcctaaatttatgtcgatttaaccaaaata |
46773493 |
T |
|
| Q |
210 |
tactttatatagtgttcatgtcaaaattgtgttcaaataacatcactattaccgcaaaaggagattccatnnnnnnnnnnttaccacaaaaggagataat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46773492 |
tactttatatagtgttcatgtcaaaattgtgttcaaataacatcactattaccgcaaaaggagattccataaaaaaaca-ttaccacaaaaggagataat |
46773394 |
T |
|
| Q |
310 |
tttataagtttgtgtatagtccattttcgtcaacatgcctttctaatttttccacagaggatcgaatatattctaacgtgtttttctaacgaagtaaaaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46773393 |
tttataagtttgtgtatagtccattttagtcaacatgcatttctaatttttccacagaggatcgaatatattctaacgtgtttttctaacgaagtaaaaa |
46773294 |
T |
|
| Q |
410 |
gaatgtgtttgtaacctaatgaacagcactagtgcttaaacaaagcaagaaactaagcaaatgtggcaatataaatacaacatccaagcttgaaaactaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46773293 |
gaatgtgtttgtaacctaatgaacagcactagtgcttaaacaaagcaagaaactaagcaaatgtggcaatataaatacaacatccaagcttgaaaactaa |
46773194 |
T |
|
| Q |
510 |
tcacgaacaaaacatataacactagttagtgactgaaagggaatatttcaaatttctcaaatttcaggtatggcgttcatggagcacaaagggttcaatt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46773193 |
tcacgaacaaaacatataacactagttagtgactgatagggaatatttcaaatttctcaaatttcaggtatggcgttcatggagcacaaagggttcaatg |
46773094 |
T |
|
| Q |
610 |
gtcatcatggcaagcgtg |
627 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
46773093 |
gtcatcatggaaagcgtg |
46773076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 398 - 606
Target Start/End: Complemental strand, 46768537 - 46768317
Alignment:
| Q |
398 |
acgaagtaaaaagaatgtgtttgtaacctaatgaacagcactag------tgcttaaacaaagcaagaaactaagcaaatgtggcaatataaatacaaca |
491 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
46768537 |
acgaagtaaaaagaatgtggttgtaacaaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagca |
46768438 |
T |
|
| Q |
492 |
tccaagcttgaaaactaatcacgaacaaaacata----taacactagttagtgactga--aagggaatatttcaaatttctcaaatttcaggtatggcgt |
585 |
Q |
| |
|
||||| | ||||| | ||||| |||||||||||| ||| |||| ||||||||| || | | |||||||||||||||||||||||||||| ||| |
|
|
| T |
46768437 |
tccaatcatgaaagcaaatcatgaacaaaacataacataaactatagtaagtgactgactgagaggaaatttcaaatttctcaaatttcaggtatgccgt |
46768338 |
T |
|
| Q |
586 |
tcatggagcacaaagggttca |
606 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
46768337 |
tcatggatcacaaagggttca |
46768317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University