View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_13 (Length: 614)

Name: NF18674_low_13
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_13
NF18674_low_13
[»] chr7 (1 HSPs)
chr7 (17-187)||(32059927-32060097)
[»] chr5 (3 HSPs)
chr5 (236-418)||(14945200-14945382)
chr5 (46-88)||(14945552-14945594)
chr5 (391-440)||(8724594-8724643)
[»] chr8 (2 HSPs)
chr8 (381-441)||(11107879-11107939)
chr8 (390-448)||(39533584-39533642)
[»] chr6 (1 HSPs)
chr6 (390-448)||(18748485-18748543)
[»] chr2 (1 HSPs)
chr2 (328-402)||(9834711-9834785)
[»] chr1 (1 HSPs)
chr1 (390-448)||(28214411-28214469)
[»] chr4 (1 HSPs)
chr4 (400-448)||(52468019-52468067)
[»] chr3 (2 HSPs)
chr3 (390-444)||(29704532-29704586)
chr3 (391-440)||(15789927-15789976)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 32059927 - 32060097
Alignment:
Q  17 tgaataatagcaatattgttgcaagagatagcacatgcttgaggattggaggaatgccaacaagaagcaacagtcacaacacatacagtctggtaatgca 116  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||    
T  32059927 tgaataatagaaatattgttgcaagagataacacatgcttgaggattggaggaatgccaacaagaagcaacagtcacaactcatacagtctagtgatgca 32060026  T
Q  117 gctgctgtcacgctgcaaacagcagaacaaggctcgggcagcaagaatgttggacagagatggaagaagcc 187  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  32060027 gctgctgtcacgctgcaaacagcagaacaaggctcgggcaacaagaatgttggacagaaatggaagaagcc 32060097  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 236 - 418
Target Start/End: Complemental strand, 14945382 - 14945200
Alignment:
Q  236 cacaaataggctgggtatagctttgtgcatccctgacgaagaggggcattttgtacgcacaaaaacgatgtggttgacccgggtatgtcttttagatgta 335  Q
    |||||||||| |||||||||   ||||||||| |||| ||||||| | |||||||  | | ||||| |||||||| | ||   ||| | |  ||||||||    
T  14945382 cacaaataggttgggtatagagatgtgcatccgtgacaaagagggacgttttgtattcgctaaaacaatgtggttcatccctatatatttagtagatgta 14945283  T
Q  336 ggtgaggcattgggtttgtattatcctatttggtggatacattatttacggctacaaaatgttgattttgaagtcgattcgaa 418  Q
    || || ||||| ||||||||| || |||||  |||||||||| ||||||| |||| |||||||||||||||||| ||||||||    
T  14945282 ggagaagcatttggtttgtatcatgctattcagtggatacatgatttacgactaccaaatgttgattttgaagttgattcgaa 14945200  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 14945594 - 14945552
Alignment:
Q  46 agcacatgcttgaggattggaggaatgccaacaagaagcaaca 88  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||    
T  14945594 agcacttgcttgaggattgtaggactgccaacaagaagcaaca 14945552  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 8724594 - 8724643
Alignment:
Q  391 aaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaac 440  Q
    ||||||||||||||||||| || ||||| || |||||||| |||||||||    
T  8724594 aaaatgttgattttgaagttgactcgaaacgagtagcagattatttcaac 8724643  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 11107939 - 11107879
Alignment:
Q  381 ttacggctacaaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaacc 441  Q
    |||| ||| ||||||||||||||||| || ||||||||||| ||||| |||||||||||||    
T  11107939 ttacagcttcaaaatgttgattttgaggtagattcgaagcgcgtagctgactatttcaacc 11107879  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 39533584 - 39533642
Alignment:
Q  390 caaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaaccgaagcaa 448  Q
    ||||||||||||||||| || |||||||| || |||||| | ||||| |||||||||||    
T  39533584 caaaatgttgattttgaggttgattcgaaacgtgtagcaaattattttaaccgaagcaa 39533642  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 18748485 - 18748543
Alignment:
Q  390 caaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaaccgaagcaa 448  Q
    ||||||||||||||||| || |||||||| || |||||||| ||||| |||||||||||    
T  18748485 caaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaa 18748543  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 9834785 - 9834711
Alignment:
Q  328 tagatgtaggtgaggcattgggtttgtattatcctatttggtggatacattatttacggctacaaaatgttgatt 402  Q
    |||||||||| || || ||||| |||||| || |||||  |||||||||| |||||||||||| |||||||||||    
T  9834785 tagatgtaggagaagctttggggttgtatcatgctattaagtggatacatgatttacggctaccaaatgttgatt 9834711  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 28214469 - 28214411
Alignment:
Q  390 caaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaaccgaagcaa 448  Q
    ||||||||||||||||| || |||||||| || |||||||| ||||| |||||||||||    
T  28214469 caaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaa 28214411  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 52468067 - 52468019
Alignment:
Q  400 attttgaagtcgattcgaagcgggtagcagactatttcaaccgaagcaa 448  Q
    ||||||| || ||||||||||| |||||||| |||||||||||||||||    
T  52468067 attttgaggtagattcgaagcgtgtagcagattatttcaaccgaagcaa 52468019  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 29704532 - 29704586
Alignment:
Q  390 caaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaaccgaa 444  Q
    ||||||||||||||||| || |||||||| || |||||||| ||||| |||||||    
T  29704532 caaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaa 29704586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 15789927 - 15789976
Alignment:
Q  391 aaaatgttgattttgaagtcgattcgaagcgggtagcagactatttcaac 440  Q
    ||||||||||||||||||| || ||||| || |||||||| |||||||||    
T  15789927 aaaatgttgattttgaagttgactcgaaacgagtagcagattatttcaac 15789976  T

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