View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_17 (Length: 520)

Name: NF18674_low_17
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_17
NF18674_low_17
[»] chr2 (10 HSPs)
chr2 (22-510)||(3220277-3220763)
chr2 (37-345)||(12504720-12505032)
chr2 (37-345)||(14680894-14681206)
chr2 (168-345)||(39587451-39587646)
chr2 (447-509)||(12505163-12505225)
chr2 (447-509)||(14680701-14680763)
chr2 (447-509)||(39587777-39587839)
chr2 (400-453)||(12505091-12505144)
chr2 (400-453)||(14680782-14680835)
chr2 (400-453)||(39587705-39587758)
[»] chr1 (10 HSPs)
chr1 (42-349)||(52887707-52888022)
chr1 (37-345)||(52608987-52609299)
chr1 (42-344)||(29886958-29887263)
chr1 (448-509)||(52608794-52608855)
chr1 (447-509)||(52888149-52888210)
chr1 (400-453)||(52608875-52608928)
chr1 (400-453)||(52888077-52888130)
chr1 (211-315)||(13728701-13728805)
chr1 (447-487)||(29887395-29887435)
chr1 (409-453)||(29887332-29887376)
[»] scaffold0014 (6 HSPs)
scaffold0014 (37-345)||(173513-173825)
scaffold0014 (37-345)||(143719-144031)
scaffold0014 (447-509)||(144162-144224)
scaffold0014 (447-509)||(173956-174018)
scaffold0014 (400-453)||(173884-173937)
scaffold0014 (400-453)||(144090-144143)
[»] chr8 (8 HSPs)
chr8 (37-345)||(44197897-44198209)
chr8 (42-345)||(20793444-20793751)
chr8 (37-345)||(23928942-23929254)
chr8 (447-509)||(23928749-23928811)
chr8 (447-509)||(44198340-44198402)
chr8 (400-453)||(23928830-23928883)
chr8 (400-453)||(44198268-44198321)
chr8 (400-447)||(20793810-20793857)
[»] chr7 (15 HSPs)
chr7 (37-345)||(48513409-48513721)
chr7 (37-345)||(48727851-48728163)
chr7 (37-345)||(3718203-3718514)
chr7 (70-345)||(42105178-42105457)
chr7 (447-509)||(42105588-42105650)
chr7 (447-509)||(48513216-48513278)
chr7 (447-509)||(3718010-3718072)
chr7 (447-509)||(48727658-48727720)
chr7 (400-453)||(42105516-42105569)
chr7 (400-453)||(48513297-48513350)
chr7 (400-453)||(48727739-48727792)
chr7 (400-453)||(3718091-3718144)
chr7 (217-269)||(34529808-34529860)
chr7 (217-269)||(45574882-45574934)
chr7 (220-269)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (37-345)||(29651774-29652086)
chr6 (448-509)||(29652218-29652279)
chr6 (400-453)||(29652145-29652198)
[»] chr5 (12 HSPs)
chr5 (37-345)||(36678940-36679252)
chr5 (37-345)||(36662526-36662838)
chr5 (37-315)||(23203822-23204100)
chr5 (88-345)||(43560199-43560465)
chr5 (447-509)||(36662969-36663031)
chr5 (448-509)||(36678747-36678808)
chr5 (449-509)||(23198492-23198552)
chr5 (400-453)||(36662897-36662950)
chr5 (400-453)||(36678828-36678881)
chr5 (400-453)||(43560524-43560577)
chr5 (400-453)||(23198573-23198626)
chr5 (314-345)||(23198685-23198716)
[»] chr3 (10 HSPs)
chr3 (37-345)||(38327668-38327980)
chr3 (37-345)||(46073352-46073662)
chr3 (37-345)||(55488644-55488956)
chr3 (447-509)||(46073793-46073855)
chr3 (448-509)||(38327475-38327536)
chr3 (447-509)||(55489087-55489149)
chr3 (400-453)||(38327556-38327609)
chr3 (400-453)||(46073721-46073774)
chr3 (400-453)||(55489015-55489068)
chr3 (217-269)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (88-345)||(143-409)
scaffold1284 (400-453)||(468-521)
[»] chr4 (1 HSPs)
chr4 (82-269)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (37-239)||(19891-20093)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 22 - 510
Target Start/End: Original strand, 3220277 - 3220763
Alignment:
Q  22 gacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcg 121  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220277 gacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcg 3220374  T
Q  122 aaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactga 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220375 aaacaaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactga 3220474  T
Q  222 atgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggtttggg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3220475 atgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcgctgctttcgcgattcgttctccttcgccactcgtggtttggg 3220574  T
Q  322 atgagattcatagttactgcttcatgcaaagcaaagaatcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatc 421  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220575 atgagattcatagttactgcttcatgcaaagcaaagattcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatc 3220674  T
Q  422 attgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220675 attgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctatg 3220763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 12504720 - 12505032
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  12504720 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 12504819  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  12504820 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 12504919  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  12504920 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 12505019  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  12505020 agttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 14681206 - 14680894
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  14681206 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 14681107  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  14681106 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 14681007  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  14681006 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 14680907  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  14680906 agttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 168 - 345
Target Start/End: Original strand, 39587451 - 39587646
Alignment:
Q  168 ttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacct 253  Q
    |||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| |||||||||||||    
T  39587451 ttatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacct 39587550  T
Q  254 ggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttgggatgagattcatagttactgcttca 345  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||||||||| |||| |||||||||||    
T  39587551 ggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttgggatgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 12505163 - 12505225
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505163 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 12505225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 14680763 - 14680701
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680763 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 14680701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 39587777 - 39587839
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39587777 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaggagtttgaccctat 39587839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 12505091 - 12505144
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12505091 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 12505144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 14680835 - 14680782
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  14680835 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 14680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 39587705 - 39587758
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39587705 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 39587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 42 - 349
Target Start/End: Original strand, 52887707 - 52888022
Alignment:
Q  42 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 141  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||    
T  52887707 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt 52887806  T
Q  142 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcg----cgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagat 237  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52887807 gtgatttcacctgagattccaccggtttatctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagat 52887906  T
Q  238 tctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcata 333  Q
    || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||| ||||    
T  52887907 tcattgctctgcacctggattctttcaacgatttcgccttcactactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccata 52888006  T
Q  334 gttactgcttcatgca 349  Q
    ||||||||||||||||    
T  52888007 gttactgcttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 52609299 - 52608987
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  52609299 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 52609200  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  52609199 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 52609100  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  52609099 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 52609000  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  52608999 agttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 29886958 - 29887263
Alignment:
Q  42 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 141  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  29886958 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 29887057  T
Q  142 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 241  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |    
T  29887058 gtgatttcgcctgagattccaccggtttatctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcat 29887156  T
Q  242 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 337  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  29887157 tgctctgcacctggattctttcaacgatttcaccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagtta 29887256  T
Q  338 ctgcttc 344  Q
    |||||||    
T  29887257 ctgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 52608855 - 52608794
Alignment:
Q  448 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608855 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 52888149 - 52888210
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52888149 agtctctcacagg-acctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 52608928 - 52608875
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52608928 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 52888077 - 52888130
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52888077 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  211 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 310  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  311 cgtgg 315  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 29887395 - 29887435
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcac 487  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887395 agtctctcacagggacctaattgaagttgttcttgaagcac 29887435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 29887332 - 29887376
Alignment:
Q  409 tgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  29887332 tgtcgccgaattcattgctcgaattcgcgcaatttcagagtctct 29887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 173513 - 173825
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  173513 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 173612  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  173613 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 173712  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  173713 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 173812  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  173813 agttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 143719 - 144031
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  143719 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 143818  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  143819 aatttgtgatttcacctgagattccatcggtttatctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 143918  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| |||||| |||||||||||||||||||||| | |||||| || |||||||| ||||||||||||| |||||| |    ||||||||||||||| |||    
T  143919 ttcattgctcagcacctggattctttcaacgatctcgccttcgctactttcgcggttcgttctccttctccactcttggcaggtttgggatgagatccat 144018  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  144019 agttactgcttca 144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 144162 - 144224
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144162 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 144224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 173956 - 174018
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173956 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 174018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 173884 - 173937
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  173884 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 144090 - 144143
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  144090 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 44197897 - 44198209
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  44197897 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 44197996  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  44197997 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 44198096  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  44198097 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 44198196  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  44198197 agttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 42 - 345
Target Start/End: Original strand, 20793444 - 20793751
Alignment:
Q  42 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 141  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  20793444 cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 20793543  T
Q  142 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 241  Q
    |||||||||||| | ||||||| ||||||||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| |    
T  20793544 gtgatttcacctgatattccacaggtttatctcacagatgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcat 20793643  T
Q  242 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 337  Q
    |||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||    
T  20793644 tgctctgcacctggattctttcaacgatatcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagtta 20793743  T
Q  338 ctgcttca 345  Q
    ||||||||    
T  20793744 ctgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 23929254 - 23928942
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||    
T  23929254 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga 23929155  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||    
T  23929154 aatttgtgatttcacctgatattccactgatttatctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaaga 23929055  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| |||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  23929054 ttcattgctctgcacctgaattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 23928955  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  23928954 agttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 23928811 - 23928749
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928811 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23928749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 44198340 - 44198402
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198340 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 44198402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 23928883 - 23928830
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  23928883 ttcacgcactgtcgctgaattcattgctcgaattcgcacaatttcagagtctct 23928830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 44198268 - 44198321
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44198268 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 44198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 20793810 - 20793857
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcaga 447  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20793810 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcaga 20793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 48513721 - 48513409
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  48513721 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48513622  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  48513621 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 48513522  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48513521 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48513422  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  48513421 agttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 48728163 - 48727851
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||    
T  48728163 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48728064  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||    
T  48728063 aatttgtgatttcacctgagattccaccggtttatctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaaga 48727964  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48727963 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48727864  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  48727863 agttactgcttca 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 3718514 - 3718203
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| | |||||| ||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||||    
T  3718514 aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttct-cgcggaacgaagatggtga 3718416  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  3718415 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaaga 3718316  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||     
T  3718315 ttcattgctctgcacctggattctttcaacgattttgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccac 3718216  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  3718215 agttactgcttca 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 70 - 345
Target Start/End: Original strand, 42105178 - 42105457
Alignment:
Q  70 gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggttt 169  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  42105178 gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggttt 42105277  T
Q  170 atctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
    |||||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42105278 atctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgat 42105377  T
Q  270 ttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 345  Q
    || |||||  || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  42105378 ttcgccttggctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 42105588 - 42105650
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105588 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 42105650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 48513278 - 48513216
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513278 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48513216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 3718072 - 3718010
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3718072 agtctctcacagggacctaattgaagttgttcttgaagcacttccagaagagtttgaccctat 3718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 48727720 - 48727658
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48727720 agtctctcacagggtcctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 42105516 - 42105569
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42105516 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 42105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 48513350 - 48513297
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48513350 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 48513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 48727792 - 48727739
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  48727792 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 48727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 3718144 - 3718091
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3718144 ttcacgcactgtcgttgaattcattgctcgaattcacgcaatttcagagtctct 3718091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  217 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  217 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  220 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 29651774 - 29652086
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  29651774 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 29651873  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  29651874 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 29651973  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  29651974 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 29652073  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  29652074 agttactgcttca 29652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 29652218 - 29652279
Alignment:
Q  448 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652218 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 29652279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 29652145 - 29652198
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29652145 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 29652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 36679252 - 36678940
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36679252 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36679153  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36679152 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36679053  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36679052 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36678953  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  36678952 agttactgcttca 36678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 36662526 - 36662838
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36662526 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36662625  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36662626 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36662725  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36662726 ttcattgctctgcacctggattctttcaacgatttcggcttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36662825  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  36662826 agttactgcttca 36662838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 37 - 315
Target Start/End: Complemental strand, 23204100 - 23203822
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23204100 aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 23204001  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||| |||| |||| ||||||||||||||||||||| ||    
T  23204000 aatttgtgatttcacctgagattccaccggtttatctcataaatgcagcacgtggagcaggaacggagaatcctgtttacactgaatgggaagaacacga 23203901  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg 315  Q
    ||  ||||||| ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  23203900 ttaattgctctacacctggattctttcaacgatttcgcctttgctactttcgcgattcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 88 - 345
Target Start/End: Original strand, 43560199 - 43560465
Alignment:
Q  88 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 187  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 43560297  T
Q  188 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 281  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  43560298 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 43560397  T
Q  282 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 345  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  43560398 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 43560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 36662969 - 36663031
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36662969 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 36678808 - 36678747
Alignment:
Q  448 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678808 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36678747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 23198552 - 23198492
Alignment:
Q  449 tctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23198552 tctctcatagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23198492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 36662897 - 36662950
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  36662897 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 36662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 36678881 - 36678828
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  36678881 ttcacgcactgtctctgaattcattgctcgaattcgcgcaatttcagagtctct 36678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 43560524 - 43560577
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  43560524 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 43560577  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 23198626 - 23198573
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  23198626 ttcacgcactgtcgctgaattcattgctcgaatttgcacaatttcagagtctct 23198573  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  314 ggtttgggatgagattcatagttactgcttca 345  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

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Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 345
Target Start/End: Complemental strand, 38327980 - 38327668
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  38327980 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 38327881  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  38327880 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 38327781  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  38327780 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 38327681  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  38327680 agttactgcttca 38327668  T

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Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 46073352 - 46073662
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||    
T  46073352 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga 46073451  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  46073452 aatttgtgatttcacctgagattcca--ggtttatctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 46073549  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg----tttgggatgagattcat 332  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||| |||    ||||||||||||| |||    
T  46073550 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctcctttgccactcatggcagatttgggatgagatccat 46073649  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  46073650 agttactgcttca 46073662  T

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Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 55488644 - 55488956
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  55488644 aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 55488743  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  55488744 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaaga 55488843  T
Q  237 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggt----ttgggatgagattcat 332  Q
    ||| ||||||||||||||| ||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||     |||||||||||| ||     
T  55488844 ttcattgctctgcacctgggttctttcaacgatttcgccttcgctactttcgcggttcgttctccttcgccactcgtggcaggcttgggatgagatccac 55488943  T
Q  333 agttactgcttca 345  Q
    |||||||||||||    
T  55488944 agttactgcttca 55488956  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 46073793 - 46073855
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073793 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 46073855  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 38327536 - 38327475
Alignment:
Q  448 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327536 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 38327475  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 55489087 - 55489149
Alignment:
Q  447 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55489087 agtctctcacagggacctaattgaagttgttcttgaagcacttcttgaagagtttgaccctat 55489149  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 38327609 - 38327556
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38327609 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 38327556  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 46073721 - 46073774
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  46073721 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaaattcagagtctct 46073774  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 55489015 - 55489068
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  55489015 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttctgagtctct 55489068  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  217 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

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Target: scaffold1284 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 88 - 345
Target Start/End: Original strand, 143 - 409
Alignment:
Q  88 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 187  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 241  T
Q  188 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 281  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  242 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 341  T
Q  282 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 345  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  342 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 409  T

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Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 468 - 521
Alignment:
Q  400 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 453  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  468 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 521  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 56288780 - 56288593
Alignment:
Q  82 taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatg 181  Q
    |||||||||||||| ||||| |||||||| ||| | ||||  ||||| | |||||||  |||  |||| || |||||||||||||| |||||||| || |    
T  56288780 taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcaccgacg 56288681  T
Q  182 aagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 269  Q
      || ||||  || |||||| |||| || || || || ||||||||||||||||||||| |||| || || |||||||| || |||||    
T  56288680 ctgctcgcgccgccggaacggagaatccggcgtataccgaatgggaagaacaagattctctgctgtgtacatggattctctccacgat 56288593  T

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Target: scaffold0318 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 20093 - 19891
Alignment:
Q  37 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 136  Q
    |||| ||||||||  ||||||| ||| |||||| |||||   ||||||||  |||||||||| ||||| ||||||||  | || | ||  |||| |||||    
T  20093 aaaaccttcaaacaggtagtttttgtgaagcttcatgattcaaactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtga 19994  T
Q  137 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 236  Q
    ||||| || |||| || || ||||||||||||||||||| | |||  || |||||||| |||| | | || ||||| ||  ||||||||||||| |||||    
T  19993 aatttatggtttctccacaaattccaccggtttatctcaaacatgtcgctcgcgaagctggaatggaaaaccctgcgtattctgaatgggaagagcaaga 19894  T
Q  237 ttc 239  Q
    |||    
T  19893 ttc 19891  T

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