View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_18 (Length: 513)
Name: NF18674_low_18
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Complemental strand, 31966636 - 31966157
Alignment:
| Q |
12 |
tatactaatgttaatatgatctttcttaatgatgtggatcctccctccttaacattgataagttagtagataatttatttagttttaagttattatcatt |
111 |
Q |
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| T |
31966636 |
tatactaatgttaatatgatatttcttaatgatgtggatcctctct----aacattgataagttagtagataattcatttagttttaagttattatcatt |
31966541 |
T |
|
| Q |
112 |
tttggattcttactctaggtacaacaaaatcagcatggcttatgaatgaatcatgcaactatttttacaacgtaatgtcattcaaccataggaatacatg |
211 |
Q |
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| T |
31966540 |
tatggattcttactctaggtacaacaaaatcaccatggcttatgaatgaatcatgcaactatttttacaacgtaatgtcattcaaccataggaatacatg |
31966441 |
T |
|
| Q |
212 |
tgaaacctaccaaataatgaa-caaggtttccaaagaaaaaattgtcgacatcctctaaagtctatatggatgatatgatgataaaatccaaaaaagagg |
310 |
Q |
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| T |
31966440 |
tgaaacctaccaaataatgaaacaaggtttccaaagaaaaaattgacgacatcctctaa-gtctatatggatgatatgatgataaaatccaaacaagagg |
31966342 |
T |
|
| Q |
311 |
tagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttgatgtacgagaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966341 |
tagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttgatgtacgagaa |
31966242 |
T |
|
| Q |
411 |
ggtaagttcctagggttctacttgatgaaacaaggaatggaggcaacccaagataaattcacagctttcaccaaaacacaattac |
495 |
Q |
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| T |
31966241 |
ggtaagttcctagggttctacttgatgaaacaaggaatggaggcaacccaagataaattcacagctttcaccaaaacacaattac |
31966157 |
T |
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