View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_19 (Length: 505)
Name: NF18674_low_19
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 5181362 - 5180884
Alignment:
| Q |
18 |
gatgcaacgaatagctgtgtgcaatgtcttctggaagtcatcagatgtttgatcaagcaatttctgcagagataaagaacttataagtagataacataac |
117 |
Q |
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| T |
5181362 |
gatgcaacgaatagctgtgtgcaatgtcttctggaagtcatcagatgtttgatcaagcaatttctgcagagataaagaacttataagtagataacataac |
5181263 |
T |
|
| Q |
118 |
gacaattttgatgaacaaggcaaattgatgtcgtataatggaaagaaattgacgttgtaacttgtaaatctaaagcgacatggttcaagtcagatgtaaa |
217 |
Q |
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| T |
5181262 |
gataattttgatgaacaaggcaaattgatgtcgtataatgaaaagaaattgacgttgtaacttgtaaatctaaagcgacatggttcaagtcagatgtaaa |
5181163 |
T |
|
| Q |
218 |
atggttattagtgtcactttgtttaataataattttcatcattccccaaattnnnnnnnnntgttttat-aaaagactttcggcatgcaaagatgtcggt |
316 |
Q |
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| T |
5181162 |
atggttattagtgtcgctttgtttaataataattttcatcattccccaaattaaaaaaatatattttataaaaagactttcggtatgcaaagatgtcggt |
5181063 |
T |
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| Q |
317 |
atagacaactgatatctcaactatgttgacacgttatccgtaaatgaaaaaagttatttattttgtaccttactaatggagattccatgctcatctctat |
416 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
5181062 |
atagccaactgatatctcaactatgttgacacattatccgtaaatgaaaaaagttatttattgtgtaccttactaatggagatgccatgttcatccctat |
5180963 |
T |
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| Q |
417 |
aacggttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
495 |
Q |
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| T |
5180962 |
aacggttgaaagttgccacaagttgagtcttgctccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
5180884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 5185496 - 5185436
Alignment:
| Q |
422 |
ttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcat |
482 |
Q |
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| T |
5185496 |
ttgaaagttgctacaagttgtgttttgctccttgttgtaagaattctaattacttcttcat |
5185436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 14173853 - 14173952
Alignment:
| Q |
383 |
accttactaatggagattccatgctcatctctataacggttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcat |
482 |
Q |
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| T |
14173853 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcat |
14173952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 495
Target Start/End: Original strand, 14152406 - 14152500
Alignment:
| Q |
401 |
ccatgctcatctctataacggttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
495 |
Q |
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||||| ||||||| ||||||||||||||||| |||||||||||| |||||||| |||| ||||| || ||||||||| |||| |||||||| |
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| T |
14152406 |
ccatgatcatctcggtaacggttgaaagttgccttaagttgagtcttgctccttgtaataaggatcctgataacttcttcaatgtttcctttctt |
14152500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 48703140 - 48703180
Alignment:
| Q |
212 |
tgtaaaatggttattagtgtcactttgtttaataataattt |
252 |
Q |
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| T |
48703140 |
tgtaaaatggttattagtgtcactttaattaataataattt |
48703180 |
T |
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