View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_20 (Length: 494)
Name: NF18674_low_20
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 38381512 - 38381043
Alignment:
| Q |
10 |
catcatcaccttcaaagacaagcatcaggatctacttcatctaaatcatactcagacaatgttatcctcgctttcgatatctatgagcatgataaccaaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38381512 |
catcatcgccttcaaagacaagcatcaggatctacttcatctaaatcatactcggacaatgttatcctcgctttcgatatctatgagcatgataaccaaa |
38381413 |
T |
|
| Q |
110 |
atgcagtatcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38381412 |
atgcagtatcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgcattggacaaagttgcaaccatcatcat |
38381313 |
T |
|
| Q |
210 |
tcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgacaagaaagtactaagagcattgaaccgcagagtacttgaaattgctcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38381312 |
tcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgacaagaaagtactaagagcattgaaccggagagtacttgaaattgctcca |
38381213 |
T |
|
| Q |
310 |
tgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacatcaattaaatcagaatattccactactcgattagccatcatatatttag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38381212 |
tgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacatctattaaatcagaatattccactactcgattagccatcatatatttag |
38381113 |
T |
|
| Q |
410 |
gtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacct |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38381112 |
gtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacct |
38381043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 38399141 - 38398672
Alignment:
| Q |
10 |
catcatcaccttcaaagacaagcatcaggatctacttcatctaaatcatactcagacaatgttatcctcgctttcgatatctatgagcatgataaccaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
38399141 |
catcatcaccttcaaagacaagcattaggatctacttcatataaatcatactcagacgatgttatcctcgctttcgatatatacgagaatgataatcaaa |
38399042 |
T |
|
| Q |
110 |
atgcagtatcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38399041 |
atgcagtatcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgcattggacaaagttgcaaccatcatcat |
38398942 |
T |
|
| Q |
210 |
tcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgacaagaaagtactaagagcattgaaccgcagagtacttgaaattgctcca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398941 |
tcttccatttcatataagatggtcaagtgatggtgtagttgaatctgatgacaagaaaatactaagagcattgaaccgcagagtacttgaaattgctcca |
38398842 |
T |
|
| Q |
310 |
tgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacatcaattaaatcagaatattccactactcgattagccatcatatatttag |
409 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
38398841 |
tgttctgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacatcaataacatcagaatgttccatgactcaattagccatcatatatttag |
38398742 |
T |
|
| Q |
410 |
gtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacct |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398741 |
gtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacct |
38398672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 38390387 - 38389909
Alignment:
| Q |
10 |
catcatcaccttcaaagacaagcatcaggatctacttcatctaaatcatactcagacaatgttatcctcgctttcgatatctatgagcatgataaccaaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
38390387 |
catcatcgccttcaaagacaagcattaggatctacttcatctaaatcatactcagacgatgttatcctcgctttcgatatatacgagcatgataatcaaa |
38390288 |
T |
|
| Q |
110 |
atgcagtatcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcat |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||| |||||||||| |||| |||||||||| |
|
|
| T |
38390287 |
atgcagtatcaacaaacacttacacagcgatatctccacctaatctcatgtatgaagatgtttgcaatcttgcattggacaaagatgcagccatcatcat |
38390188 |
T |
|
| Q |
210 |
tcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgacaagaaagtactaagagcattgaaccgcagagtacttgaaattgctcca |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38390187 |
tcttccatttcatataagatggtcaagagatggtggagttgaatctgatgacaagaaagtactaagagcattgaaccgcagagtactcgaaattgctcca |
38390088 |
T |
|
| Q |
310 |
tgttccgttggaatccttgtaactcgtgctaattcaatgcagaaac---------caacatcaattaaatcagaatattccactactcgattagccatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
38390087 |
tgttccgttggaatccttgtaactcgtgctaattcaatgccgaaaccaacactaacaacatcaataacattagaatattccactactcgattagccatca |
38389988 |
T |
|
| Q |
401 |
tatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacct |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
38389987 |
tatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgaatgatgaataatcctaggatcaacct |
38389909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 38575972 - 38576036
Alignment:
| Q |
170 |
tttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataagatggtca |
234 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
38575972 |
tttgttatcttgcattggacaaacttgcatccatcatcattcttccttttcatctgagatggtca |
38576036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 37840764 - 37841217
Alignment:
| Q |
18 |
ccttcaaagacaagcatcaggatctacttcatctaaatcatactcagacaatgttatcctcgctttcgatatctatgagcatgataaccaaaatgcagta |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||||| |||||||| ||||| |||| |||||||||||| |
|
|
| T |
37840764 |
ccttcaaagacaagcatcaggatcgacttcatataaatcatactcagacgattttatccttgcttttgatatctacgagcacaataatcaaaatgcagta |
37840863 |
T |
|
| Q |
118 |
tcaataaacacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcattcttccat |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||| |
|
|
| T |
37840864 |
tcaataaacacttacacggcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgcattagacaaagttgcaaccattataattcttccat |
37840963 |
T |
|
| Q |
218 |
ttcatataagatggtcaagtgatggtgaagttgaatctgatgacaagaaagtactaagagcattgaaccgcagagtacttgaaattgctccatgttccgt |
317 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37840964 |
ttcatataacatggtcaagtgatggtgtagttgaatctaatgacaagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgt |
37841063 |
T |
|
| Q |
318 |
tggaatccttgtaactcgtgctaattcaatgcagaaaccaacatcaattaaatcagaatattccactactcgattagccatcatatatttaggtggaaat |
417 |
Q |
| |
|
|||||| |||||||| |||||||||||||| | ||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
37841064 |
tggaatacttgtaacccgtgctaattcaataccgaaaccaac---------atcagaatattctaatactcgattagccatcatatatttaggcggaaat |
37841154 |
T |
|
| Q |
418 |
gacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcctaagatcaacctg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||| |
|
|
| T |
37841155 |
gacgatgatgaagaggtcttatgtttagcaaaaagagcaatgaataatcataggatcaacctg |
37841217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 45106437 - 45106333
Alignment:
| Q |
162 |
tgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgac |
261 |
Q |
| |
|
||||||||||||| | || || ||||| |||||| || | || || ||||||| ||||||| || ||||||||||||||| | |||||| ||||||| |
|
|
| T |
45106437 |
tgaagatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatggaaagcttgaatatgatgac |
45106338 |
T |
|
| Q |
262 |
aagaa |
266 |
Q |
| |
|
||||| |
|
|
| T |
45106337 |
aagaa |
45106333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 128 - 266
Target Start/End: Complemental strand, 35297880 - 35297742
Alignment:
| Q |
128 |
cttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataag |
227 |
Q |
| |
|
||||||| || ||||||||||| | || |||| |||||||||||| | ||||| |||||||||||| || ||||||| ||||||||||| |||| ||| |
|
|
| T |
35297880 |
cttacaccgccatatctccaccgacccttatgtatgaagatgtttgccaacttgcattggacaaagttacatccatcataattcttccattccatagaag |
35297781 |
T |
|
| Q |
228 |
atggtcaagtgatggtgaagttgaatctgatgacaagaa |
266 |
Q |
| |
|
|||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
35297780 |
atggactattgatggtggcattgaatctgatgacaagaa |
35297742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 5623815 - 5623956
Alignment:
| Q |
125 |
acacttacacagcaatatctccaccaaatctcatgtttgaagatgtttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatat |
224 |
Q |
| |
|
|||||||||| || ||||||||||||| || |||| |||||||||||| | ||||| ||||||||||| || | ||||| ||||| ||||| |||| |
|
|
| T |
5623815 |
acacttacaccgccatatctccaccaacccttatgtatgaagatgtttgccaacttgcattggacaaagtcgcgtctatcataattctcccattccatag |
5623914 |
T |
|
| Q |
225 |
aagatggtcaagtgatggtgaagttgaatctgatgacaagaa |
266 |
Q |
| |
|
||||||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
5623915 |
aagatggactattgatggtgccattgaatctgatgacaagaa |
5623956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 18525362 - 18525426
Alignment:
| Q |
170 |
tttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataagatggtca |
234 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
18525362 |
tttgttatcttgcattggacaaacttgcatccatcatcattcttccttttcatctgagatggtca |
18525426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 18629845 - 18629781
Alignment:
| Q |
170 |
tttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataagatggtca |
234 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
18629845 |
tttgttatcttgcattggacaaacttgcatccatcatcattcttccttttcatctgagatggtca |
18629781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 18642553 - 18642489
Alignment:
| Q |
170 |
tttgtaatcttgctttggacaaagttgcaaccatcatcattcttccatttcatataagatggtca |
234 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
18642553 |
tttgttatcttgcattggacaaacttgcatccatcatcattcttccttttcatctgagatggtca |
18642489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University