View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_22 (Length: 492)
Name: NF18674_low_22
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 11824839 - 11825286
Alignment:
| Q |
10 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11824839 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgcatgtgtattgtcatatgtatcatt |
11824938 |
T |
|
| Q |
110 |
tttcataccttgtttt--tatgccattacttaggtatgtttgttggtactttggatgcacaatacttacttttttaataatgcagttggtgtttggtcta |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11824939 |
tttcataccttgtttttttatgccattacttagatatgtttgttggtactttggatgcacaatacttacttttttaataatgcaattggtgtttggtcta |
11825038 |
T |
|
| Q |
208 |
tcttcacaatattattcacaataatgcagttggtattggctatttaaagagagagtcacaatatcattcacacgaagatatatatcttcatgtgaatgat |
307 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11825039 |
tcttcacaatatcattcacaataatgccgttggtattggctatttaaagagagaatcacaatatcattcacacgaagatatatatcttcatgtgaatgat |
11825138 |
T |
|
| Q |
308 |
atctatcttcac--atgcacgaattatgtaaatacgattttggtaagggttttggaaatttatagctctcaaactatatatttcaaattatatcttcata |
405 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11825139 |
atctatcttcacatatatacgaatgatgtaaatacgatttcggtaagggttttggaaatttatagctctcaaactatatatttcaaattatctcttcata |
11825238 |
T |
|
| Q |
406 |
tatcaaatctcaagccactcgatctttggcagttaaaaaccttactaa |
453 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
11825239 |
tatcaaatctcaagccactcaatctttggcagttaagaaccttactaa |
11825286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 10353490 - 10353642
Alignment:
| Q |
10 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatt |
109 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||| | |
|
|
| T |
10353490 |
ataatacttcattatgctaccttcaagat------cgttgatgggttcttttatttttaaatgttcaatgtagtatatgtgtattgtcatatgcatcagt |
10353583 |
T |
|
| Q |
110 |
tttcataccttgtttttatgccattacttaggtatgtttgttggtactttggatgcacaatactt |
174 |
Q |
| |
|
||||||| |||| | || ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10353584 |
tttcataacttg------tagcactacttagatatgtttgttggtactttggatgcacaatactt |
10353642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 11825140 - 11825099
Alignment:
| Q |
268 |
atatcattcacacgaagatatatatcttcatgtgaatgatat |
309 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11825140 |
atatcattcacatgaagatatatatcttcgtgtgaatgatat |
11825099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University