View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_3 (Length: 773)
Name: NF18674_low_3
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 654; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Original strand, 8724920 - 8725678
Alignment:
| Q |
18 |
aagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttatatttgtttcaggttataagtggtactttgccagaaataaata |
117 |
Q |
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| T |
8724920 |
aagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttatatttgtttcaggttttaagtggtactttgccagaaataaata |
8725019 |
T |
|
| Q |
118 |
tgca-----tatttgaggaacctttccaagcagacaaatactttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctc |
212 |
Q |
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| T |
8725020 |
tgcaatcaatatttgaggaacctttccaagcagacaaatactttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctc |
8725119 |
T |
|
| Q |
213 |
aaacgcacaattttacaatgcctatttaaaaaatgaaaacaatgttatccagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatg |
312 |
Q |
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| T |
8725120 |
aaacgcacaattttacaatgcctatttcaaaaatgaaaacaatgttatacagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatg |
8725219 |
T |
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| Q |
313 |
ttcgttaacggggattttgttactactgaaagcagaagacaatcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaa |
412 |
Q |
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| T |
8725220 |
ttcgttaacggggattttgttactactgaaagcagaagacaatcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaa |
8725319 |
T |
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| Q |
413 |
atatttatactacagctctcaacatgttaagacaagagtatgagataaaga----------------taagtgtttacgacttgtgcatattgtaaataa |
496 |
Q |
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| T |
8725320 |
atatttatactacagctctcaacatgttaagacaagagtatgagataaagataagagtatataaacttaagtgtttccgacttgtgcatattgtaaataa |
8725419 |
T |
|
| Q |
497 |
gaatttgattatatacaacatcgacctccctcttcctttaacatactcggtgatgtgagacttattctaagatgtttcattccaatcaattccaacaagt |
596 |
Q |
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| T |
8725420 |
gaatttgattatatacaacatcgacctccctcttcctttaacatactcggtaatgtgagacttgttctaagatgtttcattccaatcaattccaacaagt |
8725519 |
T |
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| Q |
597 |
ctgtttccatttgtttctgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttattttatggattaggaataaagta |
696 |
Q |
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| T |
8725520 |
ctgtttccatttgtttgtgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttcttttatggattaggaataaagta |
8725619 |
T |
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| Q |
697 |
cttgaatgaaatgcctaggttgaattagttttgtttgtgaacttatgcatgactcataa |
755 |
Q |
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| T |
8725620 |
cttgaatgaaatgcctaggttgaattagttttgtttgtgaacttatgcatgactcataa |
8725678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 8744759 - 8744971
Alignment:
| Q |
16 |
caaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttat-atttgtttcaggttataagtggtactttgccagaaataa |
114 |
Q |
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|||||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||||| ||||| |||| | |
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| T |
8744759 |
caaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgttttaacatttgtttcaggt---aagtagtactatgccaaaaatta |
8744855 |
T |
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| Q |
115 |
atatgca-----tatttgaggaacctttccaagcagacaaatactttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattatt |
209 |
Q |
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| T |
8744856 |
gaatggaatcaatatttgaggaaccttaccaagcagacaaatattttcccttctctactcaacaatcttcaatctatgaaaatgagcgggaagtatattt |
8744955 |
T |
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| Q |
210 |
ctcaaacgcacaattt |
225 |
Q |
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| T |
8744956 |
ctcaaactcacaattt |
8744971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 8706149 - 8706209
Alignment:
| Q |
16 |
caaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
76 |
Q |
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|||||| |||| |||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
8706149 |
caaagttttggatttaagcctttctacatgaaacatgctgagaacttatatttgttttata |
8706209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 8691535 - 8691584
Alignment:
| Q |
56 |
agaacttatacttgttttatatttgtttcaggttataagtggtactttgc |
105 |
Q |
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| T |
8691535 |
agaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgc |
8691584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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