View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_30 (Length: 438)
Name: NF18674_low_30
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 106 - 421
Target Start/End: Complemental strand, 35835724 - 35835415
Alignment:
| Q |
106 |
taaaataaatacataaagtaaaagtcattaaacacaagacacctaataatactgatattaaaaatatattcagaattccacctcaaacaaagaa-aaaat |
204 |
Q |
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| T |
35835724 |
taaaataaatacataaagtaaaagtcattaaacacaagacacctaataatactgatattaaaaatatattcagaattccacctcaaacaaagaaaaaaat |
35835625 |
T |
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| Q |
205 |
attcagaattcaaacctt-------tgtgactattactaagcatatgattggttatttatagaattagtttattcaaaataattttttgtcataccaaac |
297 |
Q |
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| T |
35835624 |
attcagaattcaaaccttcatttcctgtgactattactaagcatatgattggttatttatagaattagtttattcaaaataattttttgtcataccaaac |
35835525 |
T |
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| Q |
298 |
ataccttaagtttgttttggtcacnnnnnnnnnnnnnnnnnnncttgaactttgttgtcttctctcaaacatcatcacacacacaaacaaacttcctctc |
397 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35835524 |
ataccttaagtttgttttggtcac-----------aaaaaaaacttgaactttgttgtcttctctcaaa---catcacacacacaaacaaacttcctctc |
35835439 |
T |
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| Q |
398 |
acaaatggaaactacacaagagca |
421 |
Q |
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|||||||||||||||||||||||| |
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| T |
35835438 |
acaaatggaaactacacaagagca |
35835415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 35836498 - 35836432
Alignment:
| Q |
15 |
atatgaaatgcaatgagtagtatggtgagagagaaaaattccaaattaaatgaaaaacaagaaatag |
81 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35836498 |
atataaaatgcaatgagtagcatggtgagagagaaaaatttcaaattaaatgaaaaacaagaaatag |
35836432 |
T |
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