View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_31 (Length: 430)
Name: NF18674_low_31
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_31 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 33120144 - 33119713
Alignment:
| Q |
1 |
tctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33120144 |
tctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgta |
33120045 |
T |
|
| Q |
101 |
tttcagagttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttgg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
33120044 |
tttcagagttgataacccatggaaccgttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatattgcttgg |
33119945 |
T |
|
| Q |
201 |
acatccttgtgtgtaccaatccctatgctgtgattcgcaacgctccttagacgcgtcatcttggattaagcatgcccctggttttagctgcaaaaccaac |
300 |
Q |
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||||||||||||||||||||| || || |||||| |||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
33119944 |
acatccttgtgtgtaccaatctctgtgttgtgatgcgcagcgctccttagatgcgtcgtcttggattaagtatgcccccggttttagctgcaaacccaac |
33119845 |
T |
|
| Q |
301 |
attcgatacaagattatgtataaaagctcttaacaacaatgaatatat--aagagcataataaatttaaactactttgtttaccctatcggtggaagcac |
398 |
Q |
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||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
33119844 |
atttgatacaagattatgtataagagctcttaacaacgatgaatatatacaagagcataataaatttaaactactttgtttaccttatcggtggaatcac |
33119745 |
T |
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| Q |
399 |
agaagccacaatttgatttatctttaagacaa |
430 |
Q |
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| T |
33119744 |
agaagccacaatttgattcatctttaagacaa |
33119713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 33116924 - 33116715
Alignment:
| Q |
9 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagag |
108 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || ||||||||||| | ||||||||||||||||||||| || |||||| |
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| T |
33116924 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
33116825 |
T |
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| Q |
109 |
ttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatcctt |
208 |
Q |
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|| || |||||||||||||| |||||||| ||||||||||| | ||| |||| || || |||| | ||| | ||| || | |||||| |||||||||| |
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| T |
33116824 |
tttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatcctt |
33116725 |
T |
|
| Q |
209 |
gtgtgtacca |
218 |
Q |
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|||| ||||| |
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| T |
33116724 |
gtgtatacca |
33116715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 21491884 - 21492025
Alignment:
| Q |
19 |
gattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataaccc |
118 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| | ||||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
119 |
atggaacagttcccattcctggtgaaaagaatattatgtaga |
160 |
Q |
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||||||| ||||||||||| || || |||||||| ||||||| |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaatatgatgtaga |
21492025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
54 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
151 |
Q |
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|||||| || |||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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