View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_32 (Length: 429)
Name: NF18674_low_32
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_32 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold1476 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 5398367 - 5397970
Alignment:
| Q |
13 |
tcatcactacaagtaattgtattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgt |
112 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
5398367 |
tcatcattacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgt |
5398268 |
T |
|
| Q |
113 |
taccaggttctatacttgatactaccctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| || ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
5398267 |
taccaggttctatacttgatactaccctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcctttgtgtaatt |
5398168 |
T |
|
| Q |
213 |
tttcactaatacgtttttaaggccagtagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttga |
312 |
Q |
| |
|
| ||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
5398167 |
tatcactaacatgtttttaaggccactagatgttacattatccagagttgaagtatacacaatgcacatcattgtcttcaagttacgcccttccacatga |
5398068 |
T |
|
| Q |
313 |
ggaacttgaaaagttacagaagaaccttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatc |
410 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
5398067 |
ggaacttcaaaagttaaagaagaaccctcagaactataagttaaccaatttggataactatcgctggggaggaaacaaccaccattcccattgccatc |
5397970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 43 - 411
Target Start/End: Original strand, 5156017 - 5156385
Alignment:
| Q |
43 |
tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5156017 |
tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct |
5156116 |
T |
|
| Q |
143 |
gcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtaga |
242 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||| || | |
|
|
| T |
5156117 |
gcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactaca |
5156216 |
T |
|
| Q |
243 |
tgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttca |
342 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
5156217 |
tgttacattatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttca |
5156316 |
T |
|
| Q |
343 |
gaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatcc |
411 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
5156317 |
gaattataggttaaccaatttggataactatcactggggaggaaacaaccaccactcccattgccatcc |
5156385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 43 - 411
Target Start/End: Complemental strand, 5372388 - 5372020
Alignment:
| Q |
43 |
tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct |
142 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5372388 |
tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct |
5372289 |
T |
|
| Q |
143 |
gcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtaga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||| |||| |
|
|
| T |
5372288 |
gcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactaga |
5372189 |
T |
|
| Q |
243 |
tgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttca |
342 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
5372188 |
tgttacattatccggagttgaagtacagacattgcacataattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttca |
5372089 |
T |
|
| Q |
343 |
gaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatcc |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||| |
|
|
| T |
5372088 |
gaactataggttaaccaatttggataactatcattggggaggaaacaaccaccactcccgttgccatcc |
5372020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 43 - 396
Target Start/End: Original strand, 5100822 - 5101175
Alignment:
| Q |
43 |
tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct |
142 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5100822 |
tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca |
5100921 |
T |
|
| Q |
143 |
gcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtaga |
242 |
Q |
| |
|
| |||| ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||| | || |
|
|
| T |
5100922 |
gagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttga |
5101021 |
T |
|
| Q |
243 |
tgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttca |
342 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
5101022 |
tgttatgttatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttcc |
5101121 |
T |
|
| Q |
343 |
gaactataagttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||| | | |||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
5101122 |
gaaagaaaggttaaccaatttggataactatcaccaggaagcaaacaaccacca |
5101175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 39 - 396
Target Start/End: Original strand, 5180774 - 5181131
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
5180774 |
atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc |
5180873 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | |||||||||||| ||||||||||| || |||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
5180874 |
ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatttttaactaacatgtttttaaggccac |
5180973 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
| ||||||||| ||| |||||||| ||||||||| | |||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||| |
|
|
| T |
5180974 |
ttgatgttacattatgtggagttgaattatagacaacgagcatcattgtcttcaagttacgtccttccaccaaagggacttcaaaagttacagaagaacc |
5181073 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
5181074 |
ttcagaattaaaggttaaccaatttggataactatcactggggaggaaataaccacca |
5181131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 39 - 394
Target Start/End: Complemental strand, 5351695 - 5351340
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
5351695 |
atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac |
5351596 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
5351595 |
ctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaatttttcactaacatgtttttaaggccac |
5351496 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
| |||||||| || | | |||||||||||||| |||||||||||||||||||||| || |||| ||||||||||||||| ||| | ||||||||| | |
|
|
| T |
5351495 |
ttgatgttacgttaccaggggttgaagtatagactatgcacatcattgtcttcaagtcacgcccttccacttgaggaacttcaaatttcacagaagaaac |
5351396 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccac |
394 |
Q |
| |
|
||| ||| || | |||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
5351395 |
ttctgaaataaaggttaaccaatttggataactatcaccaggaagcaaacaaccac |
5351340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 39 - 411
Target Start/End: Complemental strand, 5439306 - 5438934
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| |||||| ||| |||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
5439306 |
atcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaac |
5439207 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||||||||| ||||||| |||| |||| ||||| ||| |||||| | |
|
|
| T |
5439206 |
ctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctat |
5439107 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||||| || | |||| |||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
5439106 |
ctgatgttatgttatccggagttgaagaatagacaatgcacatcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaacc |
5439007 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatcc |
411 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||||| | |||| |||| || |||||||| ||||| |
|
|
| T |
5439006 |
ttcagaattaaaggttaaccaatttggataactatcaccggggagaaaacgaccatcactcccattgacatcc |
5438934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 39 - 377
Target Start/End: Complemental strand, 5427195 - 5426857
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5427195 |
atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactact |
5427096 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|| | |||||| ||||||||||| || |||||| | ||||||||||||||||||||| |||| |||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
5427095 |
ctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcctttgtgtaatttttcaataacatgattttaaggccac |
5426996 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
| ||| ||||| || | | |||||||||||||| |||||||| |||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5426995 |
ttgatattacattaccaggggttgaagtatagactatgcacataattgtcttcaggttacgcccttccacttgtggaacttgaaaagttacagaagaacc |
5426896 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcacc |
377 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
5426895 |
ttcagaactataggttaaccactttggataactgtcacc |
5426857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 43 - 396
Target Start/End: Original strand, 5135923 - 5136276
Alignment:
| Q |
43 |
tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct |
142 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5135923 |
tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca |
5136022 |
T |
|
| Q |
143 |
gcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtaga |
242 |
Q |
| |
|
| |||| ||||||||||||||| ||||||| || ||||| || |||||||||||||| |||||||||||||| || || || |||||||||||| | || |
|
|
| T |
5136023 |
gagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttga |
5136122 |
T |
|
| Q |
243 |
tgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttca |
342 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
5136123 |
tgttatgttatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttcc |
5136222 |
T |
|
| Q |
343 |
gaactataagttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||| | | |||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
5136223 |
gaaagaaaggttaaccaatttggataactatcaccaggaagcaaacaaccacca |
5136276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 39 - 396
Target Start/End: Complemental strand, 5448904 - 5448547
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||| ||| |||||||| |||| ||||||||||||| ||||||||| | |||||||||||| || ||||||||||||||||||| | |
|
|
| T |
5448904 |
atcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaac |
5448805 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||| ||||||||||| | |||||||| || ||||||||||||||||| || || |||||||||||| |
|
|
| T |
5448804 |
ctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttgaatggtagcctttgtgtaatttttcaccaacacatttttaaggccac |
5448705 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||||| || | |||| | || | || |||||||||| |||| |||||||||||||||||| |
|
|
| T |
5448704 |
tagatgttacattatctggggttgaagtatagacaatgcacatcaatgacgtcaattgacgctcttccacttgagggacttcaaaagttacagaagaacc |
5448605 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||||||| || | |||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
5448604 |
ttcagaattaaaggttaaccaatctggataactatcaccgggaaggaaacaaccacca |
5448547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 62 - 411
Target Start/End: Complemental strand, 5334457 - 5334105
Alignment:
| Q |
62 |
tcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatcttcaaa |
161 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| || |
|
|
| T |
5334457 |
tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa |
5334358 |
T |
|
| Q |
162 |
ggaga-------ctaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtagatgttacaatatc |
254 |
Q |
| |
|
| || ||||||| ||||||||||| || ||||||||||| |||||||||||| ||||||| | ||||||||||||| | ||||| ||| |||| |
|
|
| T |
5334357 |
gaagttagaagtctaatgcctcactcttatagagttgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccacttgatgt-acattatc |
5334259 |
T |
|
| Q |
255 |
cagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttcagaactataagtt |
354 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||| |||| || |
|
|
| T |
5334258 |
tggggttgaattatagaaaatgcacatcattgtcttcaagttacccccttccacttgaggaacttcaaatttcacagaagaaccttcagaattatagctt |
5334159 |
T |
|
| Q |
355 |
aaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatcc |
411 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
5334158 |
aaccaatttggataactatcactgg---ggaaacaaccaccactcccattgccatcc |
5334105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 2939210 - 2938888
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2939210 |
atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc |
2939111 |
T |
|
| Q |
139 |
ctctgcccctctt----catcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaagg |
234 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| | |||||||||| || | |||||||||| |
|
|
| T |
2939110 |
ctctgcccttcttcatccatcttcgaaggagactaatgcctcactcttatagagctgaatggtggcctttatataatttttcaatatcatgtttttaagg |
2939011 |
T |
|
| Q |
235 |
ccagtagatgttacaatatccagagttgaag--tatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacaga |
332 |
Q |
| |
|
||| ||||||||||| |||| | ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| | ||||| |
|
|
| T |
2939010 |
ccactagatgttacattatctggggtttaagtatatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacaga |
2938911 |
T |
|
| Q |
333 |
agaaccttcagaactataagtta |
355 |
Q |
| |
|
||||| ||||||| |||| |||| |
|
|
| T |
2938910 |
agaacattcagaattataggtta |
2938888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 39 - 375
Target Start/End: Complemental strand, 5098506 - 5098170
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaa-aatgaacctccactttgttaccaggttctatacttgatactac |
137 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5098506 |
atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac |
5098408 |
T |
|
| Q |
138 |
cctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggcca |
237 |
Q |
| |
|
|||||| | ||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
5098407 |
cctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcctttgtgtggtttttcactaacatgtttttaaggcca |
5098308 |
T |
|
| Q |
238 |
gtagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaac |
337 |
Q |
| |
|
| ||| | | || | | ||||||||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5098307 |
cttgatatcatgttagctggggttgaagtatagacaatgcacatcattgttttcaagctacggccttccacttggggaacttgaaaagttaccgaagaac |
5098208 |
T |
|
| Q |
338 |
cttcagaactataagttaaccaatttggataactatca |
375 |
Q |
| |
|
|||||||| | | |||||||||| |||||||| |||| |
|
|
| T |
5098207 |
cttcagaatgaaaggttaaccaatctggataaccatca |
5098170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 39 - 376
Target Start/End: Complemental strand, 5178034 - 5177694
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5178034 |
atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact |
5177935 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||| || || || | |||| ||||||| |
|
|
| T |
5177934 |
ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttaaccaacaagtttgcaaggccat |
5177835 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgca---catcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
| ||||||| | ||||||| ||||||| |||| ||||||| |||||||||||| || | |||||| |||||||||| |||| ||| |||| ||||| |
|
|
| T |
5177834 |
ttgatgttatattatccagggttgaagaatagtcaatgcatatcatcattgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaaga |
5177735 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcac |
376 |
Q |
| |
|
|||||| || | | |||||||||| |||| ||||||||| |
|
|
| T |
5177734 |
accttcgcaattgaaggttaaccaatctggacaactatcac |
5177694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 39 - 376
Target Start/End: Complemental strand, 5279859 - 5279519
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5279859 |
atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact |
5279760 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||| ||||| || | |||| ||||||| |
|
|
| T |
5279759 |
ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccat |
5279660 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgca---catcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
| ||||||| | ||||||| ||||||| |||| ||||||| ||||| |||||| || | |||||| |||||||||| |||| ||| |||| ||||| |
|
|
| T |
5279659 |
ttgatgttatattatccagggttgaagaatagtcaatgcatatcatcaatgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaaga |
5279560 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcac |
376 |
Q |
| |
|
|||||| || | | |||||||||| |||| ||||||||| |
|
|
| T |
5279559 |
accttcgcaattgaaggttaaccaatctggacaactatcac |
5279519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 39 - 396
Target Start/End: Original strand, 5352863 - 5353220
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||| |||||| ||||||| | ||||| ||||||| |||||| || |||||||||||||| |
|
|
| T |
5352863 |
atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact |
5352962 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||| || |||||||||||||||||||| || |||||||||||||| | || || |||||||||||| |
|
|
| T |
5352963 |
ctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttagcaacacatttttaaggccat |
5353062 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
|| |||| ||| | ||||| ||||||| |||||||||||||||||||||||||| |||| |||| |||| || |||||||||||||||||||| |
|
|
| T |
5353063 |
atgaagttatgttattttgggttgacgtatagataatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaacc |
5353162 |
T |
|
| Q |
339 |
ttcagaactataa-gttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||||| | || || |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5353163 |
ttcag-agtagaaggttaaccaatttggataactatcaccagggaggaaacaaccacca |
5353220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 39 - 404
Target Start/End: Complemental strand, 5346324 - 5345956
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5346324 |
atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact |
5346225 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||| ||||| ||||||||||||| | ||| ||| || ||||| || ||||||||||| || ||||||||||||||||| || | |||| | |||||| |
|
|
| T |
5346224 |
ctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggtagcctttgtgtaatttttcaccaacaagtttctcaggccat |
5346125 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatc---attgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
|||||||| | ||||| |||||||| |||||||| || ||| ||||||||||| | | |||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
5346124 |
cagatgttatattatccgaagttgaagaatagacaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagtaacagaaga |
5346025 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||| ||||| || | |||||||||||| ||||||| |
|
|
| T |
5346024 |
accttcagaattgaaagttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcccatt |
5345956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 39 - 376
Target Start/End: Original strand, 5688903 - 5689243
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5688903 |
atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact |
5689002 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| || | |||| ||||||| |
|
|
| T |
5689003 |
ctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccat |
5689102 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcat---tgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
| ||||||| ||||||| |||| || |||| | ||||| ||||| |||||| || | | |||| |||||||||| |||| ||| |||| ||||| |
|
|
| T |
5689103 |
ttgatgttatgttatccagggttgtagaatagtcgatgcatatcatcaatgtctttaaagtgcgcccttccacttgagggacttcaaacattaccgaaga |
5689202 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcac |
376 |
Q |
| |
|
|||||| || | | |||||||||| |||| ||||||||| |
|
|
| T |
5689203 |
accttcgcaattgaaggttaaccaatctggacaactatcac |
5689243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 5242512 - 5242880
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5242512 |
atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact |
5242611 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||| |||||| ||||||||||||| | ||| ||| || ||||| || |||||||||||||| |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
5242612 |
ctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcctttgtgtaatttttcactaacaagtttccaaggccat |
5242711 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatc---attgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
|||||||| | ||||| |||||||| ||||||| || ||| ||||||||||| | | |||| |||||||||| |||| |||||| |||||||| |
|
|
| T |
5242712 |
cagatgttatactatccgaagttgaagaatagacagcacatatcgttattgtcttcaacattcgcccttccacttgagggacttcaaaagtaacagaaga |
5242811 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||| ||||| || | |||||||||||| ||||||| |
|
|
| T |
5242812 |
accttcagaatcgaaggttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcccatt |
5242880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 39 - 411
Target Start/End: Original strand, 5283224 - 5283584
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaa-atgaacctccactttgttaccaggttctatacttgatactac |
137 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||| || ||||||||||| |||| |||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
5283224 |
atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatga-cctccactttgttacctggttcgatacttgatattac |
5283322 |
T |
|
| Q |
138 |
cctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggcca |
237 |
Q |
| |
|
|||||||| ||| || ||||||| || ||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||||| ||| || | |
|
|
| T |
5283323 |
cctctgccactc---attttcaaagtaggaaaatgcatcactattatagagttggatggtggcctttgtgtaatttttcactaacacgtttctaaagcta |
5283419 |
T |
|
| Q |
238 |
gtagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaac |
337 |
Q |
| |
|
|||| || | | |||||||||||||||||||||||||||| |||||||||||||||| | |||||||| || | ||||||||||||||||| |
|
|
| T |
5283420 |
-----tgtt----taccaggggttgaagtatagacaatgcacatcattgacttcaagttacacccttcaacttgagggacatcaaaagttacagaagaac |
5283510 |
T |
|
| Q |
338 |
cttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccattgccatcc |
411 |
Q |
| |
|
|||| |||||| | || ||||||| ||||||||||||||| || | |||||| ||||| ||| |||| ||||| |
|
|
| T |
5283511 |
cttctgaactaaaggtcaaccaatctggataactatcaccaggaagcaaacaatcaccactcctattgacatcc |
5283584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 377
Target Start/End: Original strand, 5126629 - 5126970
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||| | |||| |||||||| | || ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5126629 |
atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact |
5126728 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||| || |||||||| || ||||||||||| || |||||||||||||| || | | || |||||||| |
|
|
| T |
5126729 |
ctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaatttttcaccaacaagcttgtaaggccat |
5126828 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcat---tgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||| ||||| | ||||||| ||| |||| ||||||||| |||| ||||||||| ||||| |
|
|
| T |
5126829 |
ctgatgttatgttatccaaggttgaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggtacttcaaaagttaccgaaga |
5126928 |
T |
|
| Q |
336 |
accttcagaactataagttaaccaatttggataactatcacc |
377 |
Q |
| |
|
|||||| || | | | |||||||| ||||||||||||||| |
|
|
| T |
5126929 |
accttcggagttgaaggctaaccaatatggataactatcacc |
5126970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 39 - 341
Target Start/End: Original strand, 5065449 - 5065754
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||| | ||||||||||||| | || |||||||| || |||||||| |||||||||||||| |
|
|
| T |
5065449 |
atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact |
5065548 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| || || |||||||| ||||||||||||| |||||||||||||| || || | ||| | |||||| |
|
|
| T |
5065549 |
ctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccat |
5065648 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgca---catcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaaga |
335 |
Q |
| |
|
||||| || ||||| | ||||||| |||||||||||| ||| ||||||||||| ||| |||| || |||||| |||| ||||||||||||||| |
|
|
| T |
5065649 |
cagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgccctttcatttgagggacttcaaaagttacagaaga |
5065748 |
T |
|
| Q |
336 |
accttc |
341 |
Q |
| |
|
|||||| |
|
|
| T |
5065749 |
accttc |
5065754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 23127310 - 23127613
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||| | | |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
23127310 |
atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaag |
23127409 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| ||| || |||||||| || |||||||||| || |||||||| | ||||||||| | |||||||||||||| || || |||||||||| |||| |
|
|
| T |
23127410 |
ctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggtaccctttgtgtaattttttaccaacacgtttttaacgccat |
23127509 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
|| || | |||| | |||||||||| ||||| ||||| |||||||||| |||| |||| ||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
23127510 |
ccgaggtaatgttatctggggttgaagtattgacaacacacattattgtcttcacgttatgcccttccacttgaggagcttcaaaacttacagaagaacc |
23127609 |
T |
|
| Q |
339 |
ttca |
342 |
Q |
| |
|
|||| |
|
|
| T |
23127610 |
ttca |
23127613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 5072692 - 5072879
Alignment:
| Q |
49 |
agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccct |
148 |
Q |
| |
|
||||||| | ||||||| |||||||||||||| ||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
5072692 |
agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccct |
5072791 |
T |
|
| Q |
149 |
cttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggcc |
236 |
Q |
| |
|
| ||||||| |||||||||||||| || |||||||| || ||||||||||| || |||||||||||||| | | |||||||||||| |
|
|
| T |
5072792 |
catcatctttgaaggagactaatgcctctctcttatatagttgaatggtggctttagtgtaatttttcaccatcaagtttttaaggcc |
5072879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 377
Target Start/End: Original strand, 5256370 - 5256488
Alignment:
| Q |
259 |
gttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttcagaactataagttaacc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |||| | |||| || |||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5256370 |
gttgaagtatagacaatgcacatcattgacatcaagttacgcccttcaacttcggggacttcaaaagttacagaagaaccttcagaactataggttaacc |
5256469 |
T |
|
| Q |
359 |
aatttggataactatcacc |
377 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5256470 |
aatttggatgactatcacc |
5256488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 5124443 - 5124622
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| || ||| | |||||||| |||||||||||| |||| |||||||||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5124443 |
atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat |
5124542 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcac |
218 |
Q |
| |
|
|| |||||||| || |||| ||| | |||||||||||| |||||||| || |||||||| | || |||||||||||||| |
|
|
| T |
5124543 |
ctatgcccctcctcctcttgaaatgcgactaatgcatctctcttatagagttgaatggtccccttcgtgtaatttttcac |
5124622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 5256114 - 5256220
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
||||||||| | ||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
5256114 |
atcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattacc |
5256213 |
T |
|
| Q |
139 |
ctctgcc |
145 |
Q |
| |
|
||||||| |
|
|
| T |
5256214 |
ctctgcc |
5256220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 5253827 - 5253701
Alignment:
| Q |
40 |
tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc |
139 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||||||| ||||||||||||| | || ||||||||| || |||||||| |||||| ||| ||| | |
|
|
| T |
5253827 |
tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc |
5253728 |
T |
|
| Q |
140 |
tctgcccctcttcatcttcaaaggaga |
166 |
Q |
| |
|
| |||||||| || ||||||||||||| |
|
|
| T |
5253727 |
tttgcccctcctcgtcttcaaaggaga |
5253701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 2657155 - 2657210
Alignment:
| Q |
43 |
tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatg |
98 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||||| || |||||||| |
|
|
| T |
2657155 |
tatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatg |
2657210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 47985393 - 47985758
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47985393 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
47985492 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| |||||| |||||| ||||||||| ||||| ||||||||||| || |||||| |||| |||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
47985493 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
47985592 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
47985593 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaacc |
47985692 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
47985693 |
ttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccatt |
47985758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 48003967 - 48004332
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48003967 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
48004066 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| |||||| |||||| ||||||||| ||||| ||||||||||| || |||||| |||| |||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
48004067 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
48004166 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
48004167 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaacc |
48004266 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
48004267 |
ttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccatt |
48004332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 47994680 - 47995045
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
47994680 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact |
47994779 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| |||||| |||||| ||||||||| ||||| ||||||||||| || |||||| |||| |||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
47994780 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
47994879 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
47994880 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaacc |
47994979 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
47994980 |
ttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccatt |
47995045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 48013252 - 48013617
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
48013252 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact |
48013351 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| |||||| |||||| ||||||||| ||||| ||||||||||| || |||||| |||| |||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
48013352 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
48013451 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
48013452 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaacc |
48013551 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccaccattcccatt |
404 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
48013552 |
ttcagaattaaaggttaaccaatttggataactatcaccagggagcaaacaacaatcactcccatt |
48013617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 60 - 340
Target Start/End: Original strand, 36212942 - 36213222
Alignment:
| Q |
60 |
tgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatcttca |
159 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||||| ||| | ||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36212942 |
tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatcttca |
36213041 |
T |
|
| Q |
160 |
aaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtagatgttacaatatccagag |
259 |
Q |
| |
|
|| ||||||||||| || |||||||| | ||||||||| || ||||||| |||||| || | ||||||||||| ||| |||| || | || ||| |
|
|
| T |
36213042 |
aatgagactaatgcctctctcttatagatctgaatggtagcctttgtgtgattttttaccatcacgtttttaagtccatctgatgctatgttttctggag |
36213141 |
T |
|
| Q |
260 |
ttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacctt |
340 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| ||||||| || ||||| |||| || | |||| ||||||||||||||| |
|
|
| T |
36213142 |
ttgaagaatagacaatacacattattgtctttaagttacgtccatccactcgagggacatcaaaaattacagaagaacctt |
36213222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 18936529 - 18936453
Alignment:
| Q |
262 |
gaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
|||| |||||||| |||||| || || |||||| ||| ||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
18936529 |
gaagaatagacaacgcacatgatggttttcaagctacgcccatccacttgtggaacttcgaaagttacagaagaacc |
18936453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 34723514 - 34723590
Alignment:
| Q |
262 |
gaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
|||| ||||||| ||||||| ||||| |||||| ||| ||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
34723514 |
gaagaatagacagtgcacatgattgttttcaagctacgcccatccacttttggaacttcgaaagttacagaagaacc |
34723590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 39 - 341
Target Start/End: Original strand, 4319302 - 4319604
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| ||| ||||||| | | || |||||| |||| ||||||||| ||| ||| ||| || |
|
|
| T |
4319302 |
atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgttacaact |
4319401 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
||||||| ||| |||| |||||||||| |||||| || |||||||| || |||||||||| ||||||| |||| ||||||| || |||| ||||||| |
|
|
| T |
4319402 |
ctctgccactcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgatttatcactaacacattttcaaggccat |
4319501 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
||||||| | | |||||| ||||||||||||||| |||||||||||| ||| ||| |||||||||| |||| |||| ||||||||||||| |
|
|
| T |
4319502 |
ctgatgttatgtcgtatgggcttgaagaatagacaatgcacattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaacc |
4319601 |
T |
|
| Q |
339 |
ttc |
341 |
Q |
| |
|
||| |
|
|
| T |
4319602 |
ttc |
4319604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 25569090 - 25568956
Alignment:
| Q |
84 |
ctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatcttcaaaggagactaatgcatcactctta |
183 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||| || | ||||||||| |||||||| || ||||| |
|
|
| T |
25569090 |
ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttg |
25568991 |
T |
|
| Q |
184 |
taaagctgaatggtggcatttgtgtaatttttcac |
218 |
Q |
| |
|
|| | ||||||||||| || |||||||||||||| |
|
|
| T |
25568990 |
tagacctgaatggtggacttggtgtaatttttcac |
25568956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 4132618 - 4132773
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| ||| ||||||||| | | ||| ||||||| ||||||||| ||| |||||||||| |
|
|
| T |
4132618 |
atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaaca---atctcgactttgtcaccaggttccatatttgatactact |
4132714 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggt |
197 |
Q |
| |
|
||||||| ||| |||| |||||||||| | ||||| || |||||||| ||||||||||| |
|
|
| T |
4132715 |
ctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggt |
4132773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 340
Target Start/End: Complemental strand, 4337187 - 4336896
Alignment:
| Q |
49 |
agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccct |
148 |
Q |
| |
|
||||||||||||||| || ||||||| || ||| ||||||||| | || ||| ||||| | ||||||||| ||| ||||||| || ||||||| || |
|
|
| T |
4337187 |
agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgccact |
4337088 |
T |
|
| Q |
149 |
cttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagtagatgttac |
248 |
Q |
| |
|
| |||| ||| ||||| |||||| || |||||| | || |||||||||| ||||||| |||| |||| || || |||| ||||||| ||||||| |
|
|
| T |
4337087 |
cctcattttcgaaggacgataatgcctctctcttaaagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccatctgatgttat |
4336988 |
T |
|
| Q |
249 |
aatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacctt |
340 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||| ||| ||| |||| ||||| |||| |||| |||||||| |||||| |
|
|
| T |
4336987 |
gtcatttgggcttgaagaatagacaatgcacatcattgtcttcaagctacgtccttccacatgagggacttcaaaatttacagaataacctt |
4336896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 381
Target Start/End: Original strand, 4122644 - 4122986
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| || ||||||||| | || ||||||||||| ||||||||| ||| ||||||| || |
|
|
| T |
4122644 |
atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgataccact |
4122743 |
T |
|
| Q |
139 |
ctctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccag |
238 |
Q |
| |
|
|||| || || |||| ||| |||||| ||| || || |||||||| || |||||||||| ||||||| |||| |||| || || |||| ||||||| |
|
|
| T |
4122744 |
ctcttccattcctcattttctaaggaggataacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccaa |
4122843 |
T |
|
| Q |
239 |
tagatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacc |
338 |
Q |
| |
|
|||| || || | |||| | |||||||||||||||||||||||||||| ||| ||| |||||||||| |||| |||| |||||| |||| |
|
|
| T |
4122844 |
ctgatgctatgccatttgggcttgatgaatagacaatgcacatcattgtcttcaagctacgtccttccacttgagggacttcaaaaacaacagaataacc |
4122943 |
T |
|
| Q |
339 |
ttcagaactataagttaaccaatttggataactatcaccgggg |
381 |
Q |
| |
|
|| || | || ||||||||||||| ||| |||||| |||| |
|
|
| T |
4122944 |
tttggagttgaaacttaaccaatttgggtaattatcacagggg |
4122986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 4362626 - 4362546
Alignment:
| Q |
260 |
ttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacctt |
340 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||| ||| |||||||||| |||| |||| |||||||| |||||| |
|
|
| T |
4362626 |
ttgaagaatagacaatgcacattattgtcttcaagctacatccttccacttgagggacttcaaaaattacagaataacctt |
4362546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 381
Target Start/End: Complemental strand, 4346430 - 4346309
Alignment:
| Q |
260 |
ttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttcagaactataagttaacca |
359 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| || ||| |||||||||| |||| ||| |||||||| |||||| || | ||||| |||| |
|
|
| T |
4346430 |
ttgaagaatagacaatgcacattattgtcttcaagctatgtccttccacttgagggacttcaaagattacagaataacctttggagttgaaagttgacca |
4346331 |
T |
|
| Q |
360 |
atttggataactatcaccgggg |
381 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
4346330 |
atttgggtaattatcaccgggg |
4346309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 7884155 - 7884261
Alignment:
| Q |
39 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc |
138 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||| ||||| |||||||| | |||| | || ||| |||||||||||| |||||| ||| |
|
|
| T |
7884155 |
atcatagacaagataaattgttgttttcttcacaatgaattcatttgtaaaaacaacaaccaccttaatttcgtttccaggttctatatttgatattact |
7884254 |
T |
|
| Q |
139 |
ctctgcc |
145 |
Q |
| |
|
||||||| |
|
|
| T |
7884255 |
ctctgcc |
7884261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 382
Target Start/End: Complemental strand, 8879604 - 8879481
Alignment:
| Q |
259 |
gttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaaccttcagaactataagttaacc |
358 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| | |||| | ||||||||||||| |||||||||| ||| ||||||| |||| ||||||||| |
|
|
| T |
8879604 |
gttgatgtatagacaatgcacatcatcgacttcaagtttctcccttcaacttgaggaactttaaaagttacacaaggaccttcacaactgaaagttaacc |
8879505 |
T |
|
| Q |
359 |
aatttggataactatcaccggggt |
382 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
8879504 |
aatttggataattatcaccggggt |
8879481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 396
Target Start/End: Original strand, 7878 - 8231
Alignment:
| Q |
40 |
tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc |
139 |
Q |
| |
|
||||||| |||||||| |||||| | ||| |||||||| | | | ||||||||| | ||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
7878 |
tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatactaaat |
7977 |
T |
|
| Q |
140 |
tctgcccctcttcatcttcaaaggagactaatgcatcactcttataaagctgaatggtggcatttgtgtaatttttcactaatacgtttttaaggccagt |
239 |
Q |
| |
|
||||| || ||||| | |||||| |||||| ||||||||||| | |||||||||||| |||||||||||||||||||| || |||||||| ||| |
|
|
| T |
7978 |
tctgcttttcctcatccttaaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatc |
8077 |
T |
|
| Q |
240 |
agatgttacaatatccagagttgaagtatagacaatgcacatcattgtcttcaagttacaccctcccacttgaggaacttgaaaagttacagaagaacct |
339 |
Q |
| |
|
| ||||| ||||| |||||||| || |||||||||||| || ||| |||||| | || |||||||||| | | |||| ||||||||||||| |
|
|
| T |
8078 |
tggtgttatgttatccgcagttgaag---aggcaatgcacatcaatgactttaagttatgctcttccacttgaggggcattaaaaattacagaagaacca |
8174 |
T |
|
| Q |
340 |
tcagaactataagttaaccaatttggataactatcaccggggtggaaacaaccacca |
396 |
Q |
| |
|
||| || | | ||||||| ||||||||||||||||| ||| | | |||||||||| |
|
|
| T |
8175 |
tcacaattgaagcttaaccagtttggataactatcacccgggagaacacaaccacca |
8231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 106 - 43
Alignment:
| Q |
70 |
acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata |
133 |
Q |
| |
|
|||||||||| |||||| |||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
106 |
acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata |
43 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 22583333 - 22583396
Alignment:
| Q |
70 |
acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata |
133 |
Q |
| |
|
|||||||||| |||||| |||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
22583333 |
acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata |
22583396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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