View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_38 (Length: 399)
Name: NF18674_low_38
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 76 - 382
Target Start/End: Complemental strand, 42688074 - 42687767
Alignment:
| Q |
76 |
ggtattagataaataagtttgttgtatactttaccttgggttagttaattagtttgcttggttagcttagttagttgtttagcctagccctctgatgtat |
175 |
Q |
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| T |
42688074 |
ggtattagataaataattctgccctatactttaccttgggttagtaagttagtttgcttggttagcttagttagttgtttagcctagccctctgatgtat |
42687975 |
T |
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| Q |
176 |
tttttgatcttgggttagttggtgttttagcctaaccctttcctagttgtatatatatactctatgttctctattgat-gattaagggatttctttgtaa |
274 |
Q |
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| T |
42687974 |
tttttgatcttgggttagttggtgttttagcctaaccctttcctagttgtatatatatactctatgttctctattgatggattaagggatttctttgtaa |
42687875 |
T |
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| Q |
275 |
ttcatatcaaggtttccctctgttatatggtatcagcctgcgatattctctttctcttatctcttttcttccatggcagatccagaagatagtgacggtt |
374 |
Q |
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| T |
42687874 |
ttcatatcaaggtttccctctgttatatggtatcagcctgcgatattctctttctcttatctcttttcttccatggcagatccagaagatagtgacggtt |
42687775 |
T |
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| Q |
375 |
ccaccatt |
382 |
Q |
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| T |
42687774 |
ccaccatt |
42687767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 42686899 - 42686709
Alignment:
| Q |
1 |
atcctcaacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccaccttgtgagggtattagataaataagtttgttgt |
100 |
Q |
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| T |
42686899 |
atcctcaacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccaccttgtgagggtattagataaataagtttgttgt |
42686800 |
T |
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| Q |
101 |
atactttaccttgggttagttaattagtttgcttggttagcttagttagttgtttagcctagccctctgatgtattttttgatcttgggttagtt |
195 |
Q |
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| T |
42686799 |
atactttaccttgggttag----ttagtttgattggttagcttagttaattgtttagcctaaccctatgatttatttcttgatcttgggttagtt |
42686709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 42686670 - 42686600
Alignment:
| Q |
231 |
tatactctatgttctctattgatgattaagggatttctttgtaattcatatcaaggtttccctctgttata |
301 |
Q |
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| T |
42686670 |
tataccctatgttctctatcaatgattaagggatttctttgttattcatgtcaaggttttactctgttata |
42686600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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