View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_4 (Length: 772)
Name: NF18674_low_4
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_4 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 734; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 15 - 772
Target Start/End: Complemental strand, 8317488 - 8316731
Alignment:
| Q |
15 |
cttacctcaatattcaagtccaacccctcaattttgatagatttcacgtggtgaaattgctttaaaaggtgaacgagaaaaggaatgcgttctgtttcag |
114 |
Q |
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| T |
8317488 |
cttacctcaatattcaagtccaacccctcaattttgatagatttcacgcgatgaaattgctttaaaaggtgaacgagaaaaggaatgcgttctgtttcag |
8317389 |
T |
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| Q |
115 |
gaaaacttggcttacaaatgatttcagctgaatcaaaagacaggaaaccatgatcgaacaaatgaattagttgtgctgtaccatacccagagtaagtgaa |
214 |
Q |
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| T |
8317388 |
gaaaacttggcttacaaatgatttcagctgaatcaaaagacaggaaaccatgatcgaacaaatgaattagttgtgctgtaccatacccagagtaagtgaa |
8317289 |
T |
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| Q |
215 |
ttgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcataataaaattcaatgtcttgttctatggaaacaatttca |
314 |
Q |
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| T |
8317288 |
ttgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcattataaaattcaatgtcttgttctatggaaacaatttca |
8317189 |
T |
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| Q |
315 |
agtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgc |
414 |
Q |
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| T |
8317188 |
agtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgc |
8317089 |
T |
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| Q |
415 |
tagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggagaacacatg |
514 |
Q |
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| T |
8317088 |
tagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggaggacacatg |
8316989 |
T |
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| Q |
515 |
gagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaaga |
614 |
Q |
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| T |
8316988 |
gagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaaggggagctgataaaaagatgaatggatccgaaga |
8316889 |
T |
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| Q |
615 |
atttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgc |
714 |
Q |
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| T |
8316888 |
atttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgc |
8316789 |
T |
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| Q |
715 |
ttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctt |
772 |
Q |
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| T |
8316788 |
ttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctt |
8316731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 290 - 375
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
290 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
375 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 289 - 666
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
289 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
388 |
Q |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
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| Q |
389 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
488 |
Q |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
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| Q |
489 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
588 |
Q |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
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| Q |
589 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
666 |
Q |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 477
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
351 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
450 |
Q |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
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| Q |
451 |
tgaggagttttaggtgtccaaaatgaa |
477 |
Q |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 706
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
633 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
706 |
Q |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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