View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_43 (Length: 390)

Name: NF18674_low_43
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_43
NF18674_low_43
[»] chr2 (20 HSPs)
chr2 (11-371)||(32310798-32311158)
chr2 (92-371)||(32799246-32799525)
chr2 (33-264)||(32813371-32813602)
chr2 (31-201)||(32792566-32792736)
chr2 (212-371)||(32306668-32306827)
chr2 (46-185)||(32563727-32563866)
chr2 (248-371)||(32792734-32792857)
chr2 (11-188)||(28213660-28213835)
chr2 (235-371)||(32563887-32564022)
chr2 (11-158)||(28222469-28222616)
chr2 (239-371)||(32786342-32786474)
chr2 (251-371)||(28213918-28214038)
chr2 (251-371)||(28222246-28222366)
chr2 (11-78)||(32790307-32790374)
chr2 (284-371)||(32813598-32813685)
chr2 (88-188)||(32785109-32785210)
chr2 (39-94)||(28148180-28148235)
chr2 (19-68)||(32799198-32799247)
chr2 (60-129)||(28179344-28179413)
chr2 (97-129)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 32311158 - 32310798
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311158 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 32311059  T
Q  111 taccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311058 taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 32310959  T
Q  211 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaattt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310958 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaattt 32310859  T
Q  311 gctaaactagaataaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 371  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32310858 gctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 32310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 92 - 371
Target Start/End: Original strand, 32799246 - 32799525
Alignment:
Q  92 atacaaaaatatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaag 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag 32799345  T
Q  192 taaacatttttcaacccagtgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttac 291  Q
    ||||||| ||| ||  ||||||||  |||||  ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32799346 taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttac 32799445  T
Q  292 ataggaagagaacaaatttgctaaactagaataaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 371  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32799446 ataggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 32799525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 264
Target Start/End: Original strand, 32813371 - 32813602
Alignment:
Q  33 aatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 132  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  133 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccagtgccatcaaaatcaataaattc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  233 tgtaacagctgtcactttacatggccaaaact 264  Q
    |||||||  ||||| |||||||||||||||||    
T  32813571 tgtaacatttgtcattttacatggccaaaact 32813602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
Q  31 gcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagtttt 130  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32792566 gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt 32792665  T
Q  131 aataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttt 201  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32792666 aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt 32792736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 212 - 371
Target Start/End: Complemental strand, 32306827 - 32306668
Alignment:
Q  212 gccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttg 311  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32306827 gccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttg 32306728  T
Q  312 ctaaactagaataaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 371  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  32306727 ctaaactagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaatt 32306668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 32563727 - 32563866
Alignment:
Q  46 agaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaataaaacataacag 145  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32563727 agaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacag 32563826  T
Q  146 aacactttgatttgtttatatttattgcagccttgcaaca 185  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32563827 aacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 32792734 - 32792857
Alignment:
Q  248 tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaataaaatatatgaaccaactcactta 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32792734 tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcactta 32792833  T
Q  348 agagcttacaagacgggagcaatt 371  Q
    ||||||||||||||||||||||||    
T  32792834 agagcttacaagacgggagcaatt 32792857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 28213660 - 28213835
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    |||||||||||||||||||||||||||||||||  ||||| |||     |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  28213660 cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaa 28213757  T
Q  111 taccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacacta 188  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  28213758 taccttggaatccaagttttattaaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 235 - 371
Target Start/End: Original strand, 32563887 - 32564022
Alignment:
Q  235 taacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaataaaatatatga 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| ||||| ||||||||||    
T  32563887 taacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaa-aaaacaaattttctaaaccagaatgaaatatatga 32563985  T
Q  335 accaactcacttaagagcttacaagacgggagcaatt 371  Q
    |||||||||||||||||||||||||||||||||||||    
T  32563986 accaactcacttaagagcttacaagacgggagcaatt 32564022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 28222616 - 28222469
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    ||||||||||| ||||||||| | |||||||||||||||| |||  || |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28222616 cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa 28222517  T
Q  111 taccttggaatccaagttttaataaaacataacagaacactttgattt 158  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  28222516 taccttggaatccaagttttattaaggcataacagaacactttgattt 28222469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 239 - 371
Target Start/End: Original strand, 32786342 - 32786474
Alignment:
Q  239 agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaataaaatatatgaacca 338  Q
    ||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||     
T  32786342 agctgtcactttacatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccg 32786441  T
Q  339 actcacttaagagcttacaagacgggagcaatt 371  Q
    |||||||||||||||||||||| ||||||||||    
T  32786442 actcacttaagagcttacaagatgggagcaatt 32786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 28213918 - 28214038
Alignment:
Q  251 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaataaaatatatgaaccaactcacttaaga 350  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  28213918 acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 28214017  T
Q  351 gcttacaagacgggagcaatt 371  Q
    |||||| | ||||||||||||    
T  28214018 gcttacgacacgggagcaatt 28214038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 371
Target Start/End: Complemental strand, 28222366 - 28222246
Alignment:
Q  251 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaataaaatatatgaaccaactcacttaaga 350  Q
    ||||||| ||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||| |||||||    
T  28222366 acatggctaaaactaccatcaaatgtgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaaga 28222267  T
Q  351 gcttacaagacgggagcaatt 371  Q
    |||||| | ||||||||||||    
T  28222266 gcttacgacacgggagcaatt 28222246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 32790307 - 32790374
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32790307 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 32813598 - 32813685
Alignment:
Q  284 aaacttacataggaagagaacaaatttgctaaactagaataaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 371  Q
    |||||| |||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  32813598 aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaatt 32813685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 32785109 - 32785210
Alignment:
Q  88 gcttatacaaaa-atatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacac 186  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac 32785208  T
Q  187 ta 188  Q
    ||    
T  32785209 ta 32785210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 28148235 - 28148180
Alignment:
Q  39 atatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttata 94  Q
    |||| ||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  28148235 atatataagaatcatttactgatctgtaattgtaagagttgaatagggagcttata 28148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
Q  19 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaat 68  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat 32799247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 28179413 - 28179344
Alignment:
Q  60 atctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttt 129  Q
    |||| |||||||||||||||||||||||||| |||  |||||| ||||  |||||||  |||||||||||    
T  28179413 atctgtaattgtaagagttgaatagggagctgataagaaaatacactttgataccttcaaatccaagttt 28179344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 28211804 - 28211836
Alignment:
Q  97 aaaatatacttcaataccttggaatccaagttt 129  Q
    |||||| ||||||||||||||||||||||||||    
T  28211804 aaaatacacttcaataccttggaatccaagttt 28211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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