View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_44 (Length: 388)
Name: NF18674_low_44
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 49038638 - 49038319
Alignment:
| Q |
24 |
ggcatatcctgcattctgccagcttcccggaacatttgatacccatcttcaacaaagaatgatcgactactgcgctagtcacctccgaggacgcagcctg |
123 |
Q |
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| T |
49038638 |
ggcatatcctgcattctgccagcttcccggaacatttgatacccatcttcaacaaagaatgatcgactgctgcgctagtcacctccgaggacgcagcctg |
49038539 |
T |
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| Q |
124 |
catcgcacggtttctgctttcaatcgcagcttctaacgtcgattcagtgagcaaccgatcaaccaataaatcaaagtgatcccccatctttgcacaatta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49038538 |
catcgcacggtttctgctttcaatcgcagcttctaatgtcgattcagtgagcaaccgatcaaccaataaatcaaagtgatcccccatctttgcacaatta |
49038439 |
T |
|
| Q |
224 |
aacaccacaatccactttactctcccaaacaagggaatgaattctatattgagtctacctaattctctatgtcaagtaaagttccttcgtatttctgaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49038438 |
aacaccacaatccactttactctcccaaacaagggaatgaattctatattgagtctacctaattctctatgtcaagtaaagttccttcgtatttctgaaa |
49038339 |
T |
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| Q |
324 |
atgaaaaaccatatagaagg |
343 |
Q |
| |
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||||||||||||||| |||| |
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| T |
49038338 |
atgaaaaaccatataaaagg |
49038319 |
T |
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