View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_45 (Length: 388)
Name: NF18674_low_45
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 46503201 - 46503560
Alignment:
| Q |
14 |
gaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtaatatgaacatatctatatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46503201 |
gaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacatatctatatc |
46503300 |
T |
|
| Q |
114 |
ttaaaaaacagtgattattatttagttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccatgttactga |
213 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503301 |
ttaaaaaacagtgcttataatttatttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccatgttactga |
46503400 |
T |
|
| Q |
214 |
aatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaacgtgagct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503401 |
aatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaacgtgagct |
46503500 |
T |
|
| Q |
314 |
tcctctctgcatgcaacttctcacaaacggtacactttcaaaccaccttttctttctttt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503501 |
tcctctctgcatgcaacttctcacaaacggtacactttcaaaccaccttttctttctttt |
46503560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University