View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_46 (Length: 385)

Name: NF18674_low_46
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_46
NF18674_low_46
[»] chr1 (12 HSPs)
chr1 (16-375)||(6500073-6500432)
chr1 (58-175)||(47777834-47777951)
chr1 (64-185)||(47713377-47713498)
chr1 (40-157)||(6513021-6513138)
chr1 (40-209)||(6517368-6517537)
chr1 (64-175)||(47745970-47746081)
chr1 (64-185)||(47718171-47718292)
chr1 (61-157)||(6521519-6521615)
chr1 (64-185)||(47760292-47760413)
chr1 (61-185)||(6507092-6507216)
chr1 (64-171)||(47772879-47772986)
chr1 (115-175)||(6523575-6523635)
[»] chr5 (4 HSPs)
chr5 (64-239)||(28856572-28856747)
chr5 (64-239)||(28861849-28862024)
chr5 (63-155)||(28831460-28831552)
chr5 (58-168)||(27371777-27371887)
[»] scaffold0341 (2 HSPs)
scaffold0341 (61-185)||(1117-1241)
scaffold0341 (61-185)||(8771-8895)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 6500432 - 6500073
Alignment:
Q  16 gaaatcaatttataccactacgtttgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500432 gaaatcaatttataccactacgtttgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaa 6500333  T
Q  116 ctctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6500332 ctctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcgatcggactatgccgaggggatat 6500233  T
Q  216 tatgccgaatagttgccgcagttgcctcagcagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagacgaa 315  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6500232 tatgccaaatagttgccgcagttgcctcagtagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagatgaa 6500133  T
Q  316 aaatgcatgttacgttattcggaccgattgatattaggagtaatggaagatgttcctatg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500132 aaatgcatgttacgttattcggaccgattgatattaggagtaatggaagatgttcctatg 6500073  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 47777834 - 47777951
Alignment:
Q  58 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 157  Q
    |||||||||||||||||||| |||||||| || | ||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||    
T  47777834 agaggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatt 47777933  T
Q  158 tttcacatggcgaaaaca 175  Q
    | |||   ||||||||||    
T  47777934 tctcattcggcgaaaaca 47777951  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 47713498 - 47713377
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    ||||||||| | |||||||||||| | || ||||||||||| |||||||| | |||||||||||||||  ||||||||||||||||||||||||| ||      
T  47713498 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47713399  T
Q  164 atggcgaaaacagcgacaaagt 185  Q
    ||||| |||||| |||||||||    
T  47713398 atggccaaaacaccgacaaagt 47713377  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 6513138 - 6513021
Alignment:
Q  40 tgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatca 139  Q
    ||||||||| | ||| || | |||||||||||||| || ||||||||| |||||||||| ||||| ||| |||| |||||||||||||||| ||| ||||    
T  6513138 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 6513039  T
Q  140 actacggtttctacaatt 157  Q
    ||||||||||||| ||||    
T  6513038 actacggtttctataatt 6513021  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 6517537 - 6517368
Alignment:
Q  40 tgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatca 139  Q
    ||||||||| | ||| || | |||| ||||||||| || ||||||||  ||| |||||| ||||| |||||||| | |||||||||||||| ||||||||    
T  6517537 tgtgatcaaaataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatca 6517438  T
Q  140 actacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgagg 209  Q
    ||||||||||||| || |  ||  |||||  |||||||||||||||  ||||||| ||||||||| ||||    
T  6517437 actacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg 6517368  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 47746081 - 47745970
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    ||||||||| | |||||||||||| | || ||||||||||| |||||||| | |||||||||||||||  ||||||||||||||||||||||||| ||      
T  47746081 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47745982  T
Q  164 atggcgaaaaca 175  Q
    ||||| ||||||    
T  47745981 atggccaaaaca 47745970  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 47718292 - 47718171
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    ||||||||| | |||||||||||| | || ||||||| ||| ||||| || | ||| |||||||||||||||||||||||||||||||||||||| ||      
T  47718292 aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt 47718193  T
Q  164 atggcgaaaacagcgacaaagt 185  Q
    ||||| ||||||  ||||||||    
T  47718192 atggccaaaacactgacaaagt 47718171  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 6521519 - 6521615
Alignment:
Q  61 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 157  Q
    ||||||||| ||||||| ||||||||  ||| |||||| ||||| |||||||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  6521519 ggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataatt 6521615  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 47760413 - 47760292
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    ||||||||| | |||||||||||| | || |||||||||||  |||| || | ||| ||||||||| |||||||||||||||||||||||||| ||||      
T  47760413 aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt 47760314  T
Q  164 atggcgaaaacagcgacaaagt 185  Q
    ||||| ||||||  ||||||||    
T  47760313 atggccaaaacactgacaaagt 47760292  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 6507216 - 6507092
Alignment:
Q  61 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 160  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  6507216 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 6507117  T
Q  161 cacatggcgaaaacagcgacaaagt 185  Q
    |  |||||| ||||| |||||||||    
T  6507116 cttatggcgtaaacaccgacaaagt 6507092  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 47772879 - 47772986
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    ||||||||| | ||||||||||||||||| ||||| || || ||||| || | |||  ||||  | ||||||||||||||||||||||||||||| |||     
T  47772879 aactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttctcat 47772978  T
Q  164 atggcgaa 171  Q
    ||||||||    
T  47772979 atggcgaa 47772986  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 6523575 - 6523635
Alignment:
Q  115 actctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaaca 175  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||| | || |||||||    
T  6523575 actctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaaca 6523635  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 28856747 - 28856572
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    |||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||     
T  28856747 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcat 28856648  T
Q  164 atggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagttgccgcagttg 239  Q
      |||||| ||| | ||||||| ||||| || ||| ||||| |||| ||| |||  || |||  ||||||||||||    
T  28856647 tcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttg 28856572  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 28862024 - 28861849
Alignment:
Q  64 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 163  Q
    |||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||     
T  28862024 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcat 28861925  T
Q  164 atggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagttgccgcagttg 239  Q
      |||||| ||| | ||||||| ||||| || ||| ||||| |||| ||| |||  || |||  ||||||||||||    
T  28861924 tcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttg 28861849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 28831552 - 28831460
Alignment:
Q  63 taactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaa 155  Q
    ||||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28831552 taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa 28831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 27371887 - 27371777
Alignment:
Q  58 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 157  Q
    ||||| |||||||||   ||||||||||| ||||| ||||| || || ||| |||  | | || ||||| |||||||||| ||||||||||| |||||||    
T  27371887 agaggaaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatt 27371788  T
Q  158 tttcacatggc 168  Q
    | ||| |||||    
T  27371787 tctcatatggc 27371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 1241 - 1117
Alignment:
Q  61 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 160  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  1241 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 1142  T
Q  161 cacatggcgaaaacagcgacaaagt 185  Q
    |  |||||| ||||| |||||||||    
T  1141 cttatggcgtaaacaccgacaaagt 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 8895 - 8771
Alignment:
Q  61 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 160  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  8895 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 8796  T
Q  161 cacatggcgaaaacagcgacaaagt 185  Q
    |  |||||| ||||| |||||||||    
T  8795 cttatggcgtaaacaccgacaaagt 8771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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