View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_47 (Length: 384)

Name: NF18674_low_47
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_47
NF18674_low_47
[»] chr6 (32 HSPs)
chr6 (19-384)||(4591997-4592362)
chr6 (140-384)||(4563598-4563842)
chr6 (228-384)||(4585608-4585767)
chr6 (244-384)||(4613719-4613859)
chr6 (19-133)||(4563452-4563567)
chr6 (249-383)||(4560502-4560636)
chr6 (242-384)||(4579421-4579563)
chr6 (251-384)||(4570970-4571103)
chr6 (253-384)||(4480693-4480824)
chr6 (259-384)||(4504398-4504523)
chr6 (249-381)||(4557121-4557253)
chr6 (250-384)||(4574305-4574439)
chr6 (234-384)||(4516302-4516452)
chr6 (244-384)||(4598162-4598302)
chr6 (253-384)||(4617022-4617153)
chr6 (259-384)||(3171747-3171872)
chr6 (253-384)||(4492955-4493086)
chr6 (253-384)||(4505857-4505988)
chr6 (253-384)||(4515122-4515253)
chr6 (253-384)||(4601789-4601920)
chr6 (259-384)||(4490356-4490481)
chr6 (259-363)||(4392048-4392152)
chr6 (259-384)||(4469809-4469934)
chr6 (259-384)||(4622148-4622273)
chr6 (259-384)||(4625957-4626082)
chr6 (253-384)||(4461123-4461254)
chr6 (89-140)||(4613968-4614019)
chr6 (259-348)||(4267203-4267292)
chr6 (272-380)||(4568072-4568183)
chr6 (150-195)||(4613888-4613933)
chr6 (283-377)||(4260162-4260256)
chr6 (249-319)||(4606957-4607027)
[»] chr8 (3 HSPs)
chr8 (242-384)||(20863844-20863986)
chr8 (253-384)||(1674226-1674357)
chr8 (222-384)||(16686268-16686432)
[»] chr5 (2 HSPs)
chr5 (253-384)||(28000100-28000231)
chr5 (259-384)||(24103005-24103130)
[»] scaffold0477 (1 HSPs)
scaffold0477 (259-384)||(4687-4812)
[»] scaffold0288 (1 HSPs)
scaffold0288 (259-384)||(3720-3845)
[»] chr3 (1 HSPs)
chr3 (253-377)||(1281114-1281238)
[»] chr7 (1 HSPs)
chr7 (259-309)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 4591997 - 4592362
Alignment:
Q  19 tcaagatactgtgaaagaattcttattccctctactttacatattaaagtggtaggattcatattataaagttaatatacatgccatataattatccaat 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4591997 tcaagataccgtgaaagaattcttattccctctactttacatattaaaatggtaggattcatattataaagttaatatacatgccatataattatccaat 4592096  T
Q  119 atgcatatattcaaaccattcagtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgt 218  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592097 atgcatatattcaaaacattcagtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgt 4592196  T
Q  219 tgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592197 tgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 4592296  T
Q  319 cgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592297 cgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcc 4592362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 140 - 384
Target Start/End: Original strand, 4563598 - 4563842
Alignment:
Q  140 agtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa 239  Q
    |||| ||| ||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||    
T  4563598 agttcaggaactcttgctgaagatgacttcacttacatcagaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaa 4563697  T
Q  240 -ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttct 338  Q
     ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| | |||||| | ||||    
T  4563698 gttacttaaatt-gattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttct 4563796  T
Q  339 tcttcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    |||||||||| |||||||||| || |||||||||||||||||||||    
T  4563797 tcttcaactcaattgccttttgccgcatcttctttcctttctctcc 4563842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 228 - 384
Target Start/End: Original strand, 4585608 - 4585767
Alignment:
Q  228 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct 324  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| |||||||| || ||||||||||||||||||||||||      
T  4585608 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc 4585707  T
Q  325 ctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  4585708 ctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctcc 4585767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 244 - 384
Target Start/End: Complemental strand, 4613859 - 4613719
Alignment:
Q  244 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc 343  Q
    |||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc 4613760  T
Q  344 aactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    ||||| |||||||||| |||||| |||||||||||||||||    
T  4613759 aactcaattgccttttgcctcattttctttcctttctctcc 4613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 4563452 - 4563567
Alignment:
Q  19 tcaagatactgtgaaagaattcttattccctctactttacatatt-aaagtggtaggattcatattataaagttaatatacatgccatataattatccaa 117  Q
    |||||||||||||||||||||||||||| | | |||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  4563452 tcaagatactgtgaaagaattcttattcacccaacttaacatatttaaacttgtaggatttatattataaagttaatatacatgccatataattatccaa 4563551  T
Q  118 tatgcatatattcaaa 133  Q
    ||||||||||||||||    
T  4563552 tatgcatatattcaaa 4563567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 383
Target Start/End: Original strand, 4560502 - 4560636
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc 348  Q
    ||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||  | |||||||||| ||||||| |||    
T  4560502 tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctc 4560601  T
Q  349 gattgcctttttcctcatcttctttcctttctctc 383  Q
     || ||||||| |||||||||||||||||| ||||    
T  4560602 catggccttttgcctcatcttctttcctttatctc 4560636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 242 - 384
Target Start/End: Original strand, 4579421 - 4579563
Alignment:
Q  242 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||  ||||||| |||||||||    
T  4579421 acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct 4579520  T
Q  342 tcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||    
T  4579521 tcaactcaattgccttttgcctcatcttctttgctttctctcc 4579563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 4570970 - 4571103
Alignment:
Q  251 tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcga 350  Q
    ||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||| ||| |    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctcca 4571069  T
Q  351 ttgcctttttcctcatcttctttcctttctctcc 384  Q
    ||   ||||||||||||||||||||||| |||||    
T  4571070 ttatatttttcctcatcttctttcctttatctcc 4571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4480693 - 4480824
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||| |||  |||||| ||| ||||||||||||| ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| | ||||||||||||||||||||||    
T  4480793 gccttttgcttcatcttctttcctttctctcc 4480824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 4504523 - 4504398
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| |||  |||||| ||||||||||||||||| || ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||||||||||||    
T  4504423 tgcctcatcttctttcctttctctcc 4504398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 4557121 - 4557253
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc 348  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| ||||||||||||  ||||||||||||| |||||| |||    
T  4557121 tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctc 4557220  T
Q  349 gattgcctttttcctcatcttctttcctttctc 381  Q
     |||  |||||||| ||||||||||||||||||    
T  4557221 aattatctttttccacatcttctttcctttctc 4557253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 384
Target Start/End: Original strand, 4574305 - 4574439
Alignment:
Q  250 ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcg 349  Q
    |||||||| |||||||||||||||||| |||| ||| ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||||| |||     
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T
Q  350 attgcctttttcctcatcttctttcctttctctcc 384  Q
    || || |||| |||||||||||||||||| |||||    
T  4574405 atggctttttgcctcatcttctttcctttatctcc 4574439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 234 - 384
Target Start/End: Original strand, 4516302 - 4516452
Alignment:
Q  234 aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc 333  Q
    ||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| |||  |||||| ||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc 4516401  T
Q  334 cttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    |||||||||||| || || ||||||| |||||||||||||||||| |||||    
T  4516402 cttcttcttcaattccatggccttttgcctcatcttctttcctttatctcc 4516452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 384
Target Start/End: Original strand, 4598162 - 4598302
Alignment:
Q  244 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc 343  Q
    |||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||   ||||||||||||| |||||    
T  4598162 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttc 4598261  T
Q  344 aactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    || || |||| ||||| |||||| ||||||||||| |||||    
T  4598262 aaatcaattgtcttttgcctcattttctttcctttatctcc 4598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4617022 - 4617153
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| | |||| ||||||||||| |||||    
T  4617122 gccttttgcttcattttctttcctttatctcc 4617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 3171747 - 3171872
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| |||  ||| ||   |||||| ||||||||||||||||| || ||| ||    
T  3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctt 3171846  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||||||||||||    
T  3171847 tgcctcatcttctttcctttctctcc 3171872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4492955 - 4493086
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||||   |||  |||||| |||||||| ||||||||  |     
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtg 4493054  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    || ||| |||||||||| ||||||||||||||    
T  4493055 gcttttctcctcatcttgtttcctttctctcc 4493086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4505857 - 4505988
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| |||||||||||||||||| || | |||||||||||||||  |||||||||| |||||||| ||   |||||  ||| |||| |||||||| ||     
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg 4505956  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
     |||||||||||||||| ||||||||||||||    
T  4505957 acctttttcctcatcttgtttcctttctctcc 4505988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 4515253 - 4515122
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||  |||||| | || ||| |||| |||  ||| || |||||||| |||||||| ||     
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata 4515154  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
     ||||||||||||| || ||||||||||||||    
T  4515153 acctttttcctcattttatttcctttctctcc 4515122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4601789 - 4601920
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| ||  |||| ||||||||||  ||| ||||||||||||| ||     
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg 4601888  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| |||||||||||| ||||| |||||    
T  4601889 gccttttgcctcatcttcttgcctttatctcc 4601920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 4490481 - 4490356
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||  || ||||| |||| ||||||||||||||| ||||||| ||| ||  ||||||||  |||| | |||||||||||||||||  | ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt 4490382  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||||||||||||    
T  4490381 tgcctcatcttctttcctttctctcc 4490356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 363
Target Start/End: Complemental strand, 4392152 - 4392048
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| |||||||| |||| |||||||||||||||  ||||| |||| |||||||  |||  |||||  |||||||||||||||||||| ||||||    
T  4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgccttt 4392053  T
Q  359 ttcct 363  Q
    |||||    
T  4392052 ttcct 4392048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 4469809 - 4469934
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| || ||||| || | ||||||||||||| | ||||||  |||||||||||| ||   ||||||| |||||||||| ||||| ||   ||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt 4469908  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||| ||||||||    
T  4469909 tccctcatcttctttccattctctcc 4469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 4622148 - 4622273
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||  |||||||| || | ||||||||||||  | ||||||||||| ||||| || ||  |||| || ||||||| ||||||||| || ||||||    
T  4622148 tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt 4622247  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    |  ||||||||||||||||| |||||    
T  4622248 tgtctcatcttctttcctttatctcc 4622273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 4625957 - 4626082
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| || || || |||| ||| ||||  ||||| ||||||||||| || || ||  || ||||||| ||||||||||||||||| || ||||||    
T  4625957 tttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttt 4626056  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||| || |||||    
T  4626057 tgcctcatcttctttccgttatctcc 4626082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4461123 - 4461254
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| ||||||||| || ||||| || | ||||||||||||| | ||||||  |||||||||||| ||   ||||||| |||||||||| || || ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
     |||||| |||||||||||||||  |||||||    
T  4461223 accttttgcctcatcttctttccaatctctcc 4461254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 4614019 - 4613968
Alignment:
Q  89 gttaatatacatgccatataattatccaatatgcatatattcaaaccattca 140  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  4614019 gttaatatacctgctatataattatccaatgtgcatatattcaaaccattca 4613968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 4267292 - 4267203
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc 348  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || |||||| ||||||||||    
T  4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactc 4267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 380
Target Start/End: Original strand, 4568072 - 4568183
Alignment:
Q  272 tccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc---cttcttcttcaactcgattgcctttttcctcatct 368  Q
    ||||| |||| ||||||||||||||| |||||| || | |||||||| |||  || ||| ||   ||||||||||||||| |  ||||||| ||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct 4568171  T
Q  369 tctttcctttct 380  Q
    | ||||||||||    
T  4568172 tttttcctttct 4568183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4613933 - 4613888
Alignment:
Q  150 ctctagctgaagatgagttcacttacatcatcacttaaattcaata 195  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4613933 ctcttgctgaagatcagttcatttacatcatcacttaaattcaata 4613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 4260256 - 4260162
Alignment:
Q  283 tttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctt 377  Q
    |||||||||||||||  ||||| ||||    || || ||| ||||||| |||||| |||||||||| ||  |||||| |||||||||||||||||    
T  4260256 tttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcctt 4260162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 319  Q
    ||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || ||||||    
T  4607027 tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc 4606957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 20863986 - 20863844
Alignment:
Q  242 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| |||  |||||| ||||||||||    
T  20863986 acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct 20863887  T
Q  342 tcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    |||||||  ||| ||||| ||||||| || |||||||||||||    
T  20863886 tcaactcatttgtcttttgcctcatcctccttcctttctctcc 20863844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 1674226 - 1674357
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| |||||||||||||| || ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| ||||||||| ||||| ||||||||    
T  1674326 gccttttgcctcatcttttttccattctctcc 1674357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 384
Target Start/End: Complemental strand, 16686432 - 16686268
Alignment:
Q  222 actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 319  Q
    ||||| ||||||||||||  | |||||  ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||||    
T  16686432 actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc 16686333  T
Q  320 gtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcc 384  Q
    | |   || ||| ||||| | | ||  || |||  ||||||||||||||||||||||||||||||    
T  16686332 gggtcttcgtccaccttcatttgcagttcaattatctttttcctcatcttctttcctttctctcc 16686268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 28000231 - 28000100
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||| ||||||||||| ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  353 gcctttttcctcatcttctttcctttctctcc 384  Q
    ||||||| ||||||||| ||||| ||||||||    
T  28000131 gccttttgcctcatcttttttccattctctcc 28000100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 24103005 - 24103130
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||| ||| ||| |||| || ||||||||||| ||||| |   |||||    
T  24103005 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttt 24103104  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | | ||||| ||||||| ||||||||    
T  24103105 tgcttcatcgtctttccgttctctcc 24103130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 4812 - 4687
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||  |||||||| |||| ||||||||||||||| |||||||| || ||||  || ||| ||||||| ||||||||||||||||| || ||||||    
T  4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttt 4713  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | |||||||||| ||||||| |||||    
T  4712 tgcctcatcttcattcctttatctcc 4687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 3845 - 3720
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt 358  Q
    ||||||||| |||||||| || | |||||||| |||||| ||||||| ||| || ||||| ||| ||||||| ||||||||||| ||||| |  ||||||    
T  3845 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttt 3746  T
Q  359 ttcctcatcttctttcctttctctcc 384  Q
    | ||||||||||||||||||||||||    
T  3745 tgcctcatcttctttcctttctctcc 3720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 377
Target Start/End: Original strand, 1281114 - 1281238
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt 352  Q
    ||||| |||||||||||  ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| |||||||||||  ||||||||| || ||     
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg 1281213  T
Q  353 gcctttttcctcatcttctttcctt 377  Q
    |||||||  ||||| ||||||||||    
T  1281214 gccttttctctcatattctttcctt 1281238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 309  Q
    ||||||||| |||||||| || | ||||||||||||||| |||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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