View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_48 (Length: 380)
Name: NF18674_low_48
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 26611592 - 26611945
Alignment:
| Q |
18 |
acttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataagattttan |
117 |
Q |
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| T |
26611592 |
acttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataagattttat |
26611691 |
T |
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| Q |
118 |
nnnnnn-ccaacgatacattactggataatttgaaacacaatttactggcttagacttggtgcaagttgtatgaggacctggttctcaattcccagaagt |
216 |
Q |
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| T |
26611692 |
tttttttccaacgaaacattactggataatttgaaacacaatttactggcttagacttggtgcaagttgtatgaggacctggttctcaattcccagaagt |
26611791 |
T |
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| Q |
217 |
gacaatttactgagtcagataattgacaatataccaaatttaattatctcttgaaagnnnnnnnnnnttcttattcgagactataaataaaggccaagag |
316 |
Q |
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| T |
26611792 |
gacaatttactgagtcagataattgacaatataccaaatttaattatctcttgaaagaaaaaaaaaattcttattcgagactataaataaaggccaagag |
26611891 |
T |
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| Q |
317 |
gaataccattacctcctacctcctacctacaaagtcattctattttcttctctg |
370 |
Q |
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| T |
26611892 |
gaataccattacctcctacctcctacctacaaagtcattctattttcttctctg |
26611945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 26596491 - 26596576
Alignment:
| Q |
24 |
gacattgatgttacacttatgagttgttttgttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataag |
110 |
Q |
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| T |
26596491 |
gacattgatgttacacttatgagttggtttgttctct-agaatatggatttgagacaaaagcatctatctctattaacgacaataag |
26596576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 26604066 - 26604262
Alignment:
| Q |
18 |
acttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggat-ttgagacaaaagcatctatctccattaacgacaataagattt-- |
114 |
Q |
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||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
26604066 |
acttgtgacattgatgttacacttatgagttgtttttgt-tcttagaatatggatattgaaacaa--gcatctatctccattaacgacaataagatttat |
26604162 |
T |
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| Q |
115 |
------------tannnnnnnccaacgatacattactggataatttgaaacacaatttactggcttagacttggtgcaagttgtatgaggacctggttct |
202 |
Q |
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| T |
26604163 |
tctttctacttttacatttttctaacgatacattactccataatttgaaacacaatttaatggcttagacttagagcaagttgtatgaggacctggttct |
26604262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 26596679 - 26596721
Alignment:
| Q |
294 |
agactataaataaaggccaagaggaataccattacctcctacc |
336 |
Q |
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| T |
26596679 |
agactataaataaagatcaagaggaataccattacttcctacc |
26596721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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