View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_49 (Length: 378)
Name: NF18674_low_49
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 48692764 - 48693124
Alignment:
| Q |
10 |
tcatcaaattaagcaatcgttaattttatacaaaatattttatgaaaccttaactaatgataacttgaagttggtataactgtccttgattaagaatgta |
109 |
Q |
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| T |
48692764 |
tcatcaaattaagcaatcgttaattttatacaaaatattttatgaaaccttaactaatgataacttgaagttggtataactgtccttgattaagaatgta |
48692863 |
T |
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| Q |
110 |
tcgt-----gtaacagatttttcataaattaatctgttgctataatttatacaattgcattgtg--ttacttataaggttccattcaattggtgaactac |
202 |
Q |
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| T |
48692864 |
tcgtatcgtgtaacagatttttcataaattaatctgttgctataatt-atacaattgcattgtgtgttacttataaggttccattcaattggtgaacaac |
48692962 |
T |
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| Q |
203 |
taattccgaggttaaaaaacaaaactcacacgataatattactataggcccgtgggttcactttgaaatgcgaggggaacagcaatggctttctctgtat |
302 |
Q |
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| T |
48692963 |
taattccgaggttaaaaaacaaaactcacacgataatattactataggtccgtgggttcactttgaaatgcgaggggaacagcaatggctttctctgtat |
48693062 |
T |
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| Q |
303 |
ttaaaaacttcattctttccacaaacatccattttctctttccacaattccatgattggttg |
364 |
Q |
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| T |
48693063 |
ttaaaaaattcattctttccacaaacatccattttctctttccacaattccatgattggttg |
48693124 |
T |
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