View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_5 (Length: 729)
Name: NF18674_low_5
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_5 |
 | |
|
| [»] scaffold0570 (3 HSPs) |
| | |
|
| [»] scaffold0201 (3 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 20 - 719
Target Start/End: Complemental strand, 23465433 - 23464734
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
23465433 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgt |
23465334 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |
|
|
| T |
23465333 |
gataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgaaatttgaagcacaat |
23465234 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaatcaataaactatt |
319 |
Q |
| |
|
|| || ||||| || |||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
23465233 |
aacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaattataggtaagtaaaatcaataaactatt |
23465134 |
T |
|
| Q |
320 |
tcctatcatttgaatgttttgtttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttaga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23465133 |
tcctatcatttgaatgttttgtttctaatatagcacaattgtttacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttaga |
23465034 |
T |
|
| Q |
420 |
aatcgaagacgaaatataattttagaaagtaaaccagaccaaattatttcgagaagtgaacaatgacattgatgtgcctggccatagttgaagaccttct |
519 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23465033 |
aattgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttct |
23464934 |
T |
|
| Q |
520 |
gaaaactatcaaagtcatcatacactatctcacaannnnnnnnacttcgatttggctgattatatttgtaccactaaaatcttaatagtagtaacacatg |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23464933 |
caaaactatcaaagtcatcatacactatctcacaattttttttacttcgatttggctgattctatttgtatcactaaaatcttaatagtagcaacacatg |
23464834 |
T |
|
| Q |
620 |
cttcgagtatcataaaacttttcnnnnnnnagaattttctttaggatttcacttcctagaaaaaatagactttaattgcattgtgtgtttggtatttcat |
719 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23464833 |
cttcgagtatcataaaacttttatttttttataattttctttaggatttcacttcctagaaaaaatagactttaattgcactgtgtgtttggtatttcat |
23464734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 20 - 614
Target Start/End: Complemental strand, 23406779 - 23406185
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
23406779 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgt |
23406680 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
23406679 |
gatacctgttttttacaacatagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttaaagcacaat |
23406580 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaatcaataaactatt |
319 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23406579 |
aatgacaagttgaagaaatggaaagattctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaatcaataaactatt |
23406480 |
T |
|
| Q |
320 |
tcctatcatttgaatgttttgtttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttaga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23406479 |
tcctatcatttgaatgttttgtttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttaga |
23406380 |
T |
|
| Q |
420 |
aatcgaagacgaaatataattttagaaagtaaaccagaccaaattatttcgagaagtgaacaatgacattgatgtgcctggccatagttgaagaccttct |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23406379 |
aatcgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggccatagttgatgaccttct |
23406280 |
T |
|
| Q |
520 |
gaaaactatcaaagtcatcatacactatctcacaannnnnnnnacttcgatttggctgattatatttgtaccactaaaatcttaatagtagtaac |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23406279 |
gaaaactatcaaagtcatcatacactatctcacaattttttttacttccatttggctgtttatatttgtaccactaaaatcttaatagcagtaac |
23406185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 453
Target Start/End: Complemental strand, 23441908 - 23441456
Alignment:
| Q |
22 |
tctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| || |||| |
|
|
| T |
23441908 |
tctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtga |
23441809 |
T |
|
| Q |
122 |
tacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaataa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23441808 |
tacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataa |
23441709 |
T |
|
| Q |
222 |
tgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattatagg--------------------caag |
301 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||| |
|
|
| T |
23441708 |
tgacaagttacaggaatggaaagatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggtaaacaaaacgaaaaaattcgaag |
23441609 |
T |
|
| Q |
302 |
taaaatcaataaactatttcctatcatttgaatgttttg-tttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttgga |
400 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||| || ||||| |
|
|
| T |
23441608 |
taaaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccatattcttaattgga |
23441509 |
T |
|
| Q |
401 |
aatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaac |
453 |
Q |
| |
|
||||||||||||||||||||| | || || ||| |||||||| |||| ||||| |
|
|
| T |
23441508 |
aatgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaac |
23441456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 453
Target Start/End: Complemental strand, 23474440 - 23473988
Alignment:
| Q |
22 |
tctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| || |||| |
|
|
| T |
23474440 |
tctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtga |
23474341 |
T |
|
| Q |
122 |
tacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaataa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23474340 |
tacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataa |
23474241 |
T |
|
| Q |
222 |
tgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattatagg--------------------caag |
301 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||| |
|
|
| T |
23474240 |
tgacaagttacaggaatggaaagatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggtaaacaaaacgaaaaaattcgaag |
23474141 |
T |
|
| Q |
302 |
taaaatcaataaactatttcctatcatttgaatgttttg-tttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttgga |
400 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| ||| |||||||||||||||| || || ||||| |
|
|
| T |
23474140 |
taaaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccattttcttaattgga |
23474041 |
T |
|
| Q |
401 |
aatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaac |
453 |
Q |
| |
|
||||||||||||||||||||| | || || ||| |||||||| |||| ||||| |
|
|
| T |
23474040 |
aatgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaac |
23473988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 23449300 - 23448880
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
23449300 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgcaacagattgt |
23449201 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
23449200 |
gataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaat |
23449101 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagta---------------- |
303 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
23449100 |
aatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattataggtaagtaaaacgaactatcctaa |
23449001 |
T |
|
| Q |
304 |
--aaatcaataaactatttcctatcatttgaatgttttg-tttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttgga |
400 |
Q |
| |
|
||||||||||||||| |||||| ||||| | |||||| ||||||||||||||||||| |||||| || |||| |||||| |||||||| || ||||| |
|
|
| T |
23449000 |
gtaaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttactacacaagtttttcatttccatattcgtgattgga |
23448901 |
T |
|
| Q |
401 |
aatgaacataaattttagaaa |
421 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
23448900 |
aatgaacataaatttgagaaa |
23448880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 23501063 - 23500643
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| || || || |
|
|
| T |
23501063 |
catctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaatatatggagcagattgt |
23500964 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
23500963 |
gataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaat |
23500864 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagta---------------- |
303 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
23500863 |
aatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaacgaactatcctaa |
23500764 |
T |
|
| Q |
304 |
--aaatcaataaactatttcctatcatttgaatgttttg-tttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttgga |
400 |
Q |
| |
|
||||||||||||||| |||||| ||||| | |||||| ||||||||||||||||||| ||||| || |||| ||||||||||||||| || ||||| |
|
|
| T |
23500763 |
gtaaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttacaacacaagtttttcatctccatattcgtgattgga |
23500664 |
T |
|
| Q |
401 |
aatgaacataaattttagaaa |
421 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
23500663 |
aatgaacataaatttgagaaa |
23500643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 23353930 - 23353644
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
23353930 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgtaacagattgt |
23353831 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
23353830 |
gataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagatttgaagcacaat |
23353731 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
306 |
Q |
| |
|
||||||||||| || |||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
23353730 |
aatgacaagttggagaaatggaaagctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagtaaaa |
23353644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 23435498 - 23435215
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |
|
|
| T |
23435498 |
catctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaagcaatatatggaattgaccgt |
23435399 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
23435398 |
gatacctgttttttacaacat---tccatcacatgtgaggaagcagaccgggagttacaagcaagcatttgcaaaacataagcgagatttgaagcacaat |
23435302 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
306 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
23435301 |
aatgacaagttgcataaatggaaagccgctctcactgaggcagctaatttagttggttgggactctcaaaattataggtaagaaaaa |
23435215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 23480790 - 23480518
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||| || || |
|
|
| T |
23480790 |
catctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataaggaacacattgt |
23480691 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
23480690 |
gataccagttttttacaaaatagatccatcacatgtgaggaaccagaccgggagttacgagcaagcttttgcaaaacataagcgagatttgaagagcaat |
23480591 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaatt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| |
|
|
| T |
23480590 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctagtttaggcggttgggactttcaaaatt |
23480518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 23456062 - 23455778
Alignment:
| Q |
22 |
tctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
23456062 |
tctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatctcaaaaagattctagaatgcaagcaatatatggaacagatcgtga |
23455963 |
T |
|
| Q |
122 |
tacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaataa |
221 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
23455962 |
tacctattttttacaacattgatccatcacatgtgaggaagcaaaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataa |
23455863 |
T |
|
| Q |
222 |
tgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
306 |
Q |
| |
|
|| |||||| || ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
23455862 |
tgccaagttggagaaatggaaagcctctctcactgaggcagctaatttagttggatgggactctcaaaattataggtaaataaaa |
23455778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 23388410 - 23388137
Alignment:
| Q |
29 |
tcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgt |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||| || ||||||||||| |
|
|
| T |
23388410 |
tcatcttctcagaaaattatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgt |
23388311 |
T |
|
| Q |
129 |
tttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaataatgacaag |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
23388310 |
tttttacaacatagatccctcacatgtgaggaagcagactgggagttacgagcaagccttcacaaaacatatgcgagatttgaagctcaataatgacaag |
23388211 |
T |
|
| Q |
229 |
ttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagt |
302 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||| ||||||||||||| ||| ||||| ||| |||| |
|
|
| T |
23388210 |
ttacaggaatggaaagccgctcttgccgaggcagctagtttagttggttgggactttcagaattacaggtaagt |
23388137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 21088604 - 21088319
Alignment:
| Q |
21 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtg |
120 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||| || ||| |
|
|
| T |
21088604 |
atctattgttatcttttcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtg |
21088505 |
T |
|
| Q |
121 |
atacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaata |
220 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||| ||| |||| |||||||| |||| | ||| |
|
|
| T |
21088504 |
atacctgttttttacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagatttaaagaacgata |
21088405 |
T |
|
| Q |
221 |
atgacaagtt---------acaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattatagg |
297 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||| ||| ||||||| ||| | ||||||| |||||||||||| |||| |
|
|
| T |
21088404 |
atgacaagttacagaaattacagaaatggaaagacgctctcattgacgcagctagtttagatggttggaactctcaaaattgtagg |
21088319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 299 - 528
Target Start/End: Complemental strand, 23480453 - 23480222
Alignment:
| Q |
299 |
aagtaaaatcaataaactatttcctatcatttgaatgttttgttt-ctaatatagcacaattatttacttcataagtctttcatctccatatttgtagtt |
397 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||| ||||||||||| |||||||||||||||||| |||| ||| |||||||||||||| |||| | ||| |
|
|
| T |
23480453 |
aagtaaaaccaataaactattttatataattttcatgttttgttttctaatatagcacaattatatactacatgagtctttcatctccttattcatggtt |
23480354 |
T |
|
| Q |
398 |
ggaaatgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccagaccaaattatttcgagaagtgaacaatgacattgatgtgcc |
497 |
Q |
| |
|
||||||||||||| |||||| ||| ||| | ||| ||||||||||||||||| ||| || |||||||| |||||||||||||||| || ||||||| |
|
|
| T |
23480353 |
ggaaatgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaa-caggccgaattatttggagaagtgaacaatgatgtttatgtgcc |
23480255 |
T |
|
| Q |
498 |
tggccatagttg--aagaccttctgaaaactat |
528 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |
|
|
| T |
23480254 |
tggccatagttgatatgaccttctgaaaactat |
23480222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 21087417 - 21087310
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||| || |
|
|
| T |
21087417 |
catcgattgacatcttctcagaaaactacgcttcctcaaaatggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgt |
21087318 |
T |
|
| Q |
120 |
gatacctg |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
21087317 |
gatacctg |
21087310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 36017399 - 36017156
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| ||||| ||||| || |||||||||| || ||||| ||||| ||||| ||| |||||||| ||||||||| || || || |||||| || |
|
|
| T |
36017399 |
catctatagtcatattctcgaaagactatgcttcttctaaatgatgcttgaatgaactcgtcaagattctagaatgcaagaaagatcagggacaaattgt |
36017300 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||| ||| | ||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||| | | |||||||| ||| |
|
|
| T |
36017299 |
gataccgattttctacgaaatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagaataagcaaaatttgaagcacaac |
36017200 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagc |
263 |
Q |
| |
|
|| |||||||| ||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
36017199 |
aaagacaagttgcagaaatagaaagatgctctcactgaagcagc |
36017156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 650 - 719
Target Start/End: Complemental strand, 23406171 - 23406102
Alignment:
| Q |
650 |
agaattttctttaggatttcacttcctagaaaaaatagactttaattgcattgtgtgtttggtatttcat |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23406171 |
agaattttctttaggatttcacttcctagaaaaaatagactttaattgcactgtgtgtttggtatttcat |
23406102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 36004736 - 36004463
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| |||||||||||| || |||| |||||||||||||||||||| ||||| ||| |||||||| ||||| ||| || || || ||| || || |
|
|
| T |
36004736 |
catctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgtaagaaagatcagggacagattgt |
36004637 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||| |||| ||| | ||||||||||||||||||||||| || | || ||||| ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
36004636 |
gataccgattttctacgaaatagatccatcacatgtgaggaatcaaaatggaagttatgggcaagcctttgcaaaacatgcacgagatttgaagcagaac |
36004537 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaatta |
293 |
Q |
| |
|
|| || | |||| || ||||||||| ||||| ||||| ||||| ||||| | || ||| ||||||||||||| |
|
|
| T |
36004536 |
aaagaaatgttaaagaaatggaaagatgctctaactgaagcagccaatttagcagggtggcactctcaaaatta |
36004463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 36025497 - 36025304
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||| || ||| | ||| || || |
|
|
| T |
36025497 |
catctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgt |
36025398 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaag |
213 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||| |||| || ||||| | | ||| |||| ||||||| ||| |||||||||| |
|
|
| T |
36025397 |
gatacctgttttctatgaaatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaag |
36025304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 36034296 - 36034062
Alignment:
| Q |
29 |
tcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatat-atggaacaaatcgtgatacctg |
127 |
Q |
| |
|
|||| |||||| || |||||||||| |||||||||| || ||||| ||| |||||||| ||||||||| || || |||| || || |||||||| |
|
|
| T |
36034296 |
tcatattctcaaaagactatgcttcttcaaaatggtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatggg-cagattgtgataccga |
36034198 |
T |
|
| Q |
128 |
ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaataatgacaa |
227 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||| | | |||||||| ||| || ||||| |
|
|
| T |
36034197 |
ttttctacgaaatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaa |
36034098 |
T |
|
| Q |
228 |
gttacaggaatggaaagccgctctcactgaggcagc |
263 |
Q |
| |
|
||| ||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
36034097 |
gttgcagaaatagaaagatgctctcactgaagcagc |
36034062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 23455726 - 23455658
Alignment:
| Q |
299 |
aagtaaaatcaataaactatttcctatcatttgaatgttttgt-ttctaatatagcacaattatttact |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
23455726 |
aagtaaaatcaataaactatttcctatcatttgcatgttttgtattctaatatagcacagttatttact |
23455658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 23353572 - 23353461
Alignment:
| Q |
342 |
ttctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaatgaacataaattttagaaatcgaagacgaaatataattt |
441 |
Q |
| |
|
|||||| | |||||||||||||||| || |||||||||||||||||||| || |||||||||||||| |||||||||| ||| | ||| ||||||| |
|
|
| T |
23353572 |
ttctaaaacagcacaattatttactacacaagtctttcatctccatattcgtgactggaaatgaacatagattttagaaaatgaaagcaaaaaataattt |
23353473 |
T |
|
| Q |
442 |
tagaaagtaaac |
453 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23353472 |
tagaaagtaaac |
23353461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 36009786 - 36009673
Alignment:
| Q |
18 |
cacatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatc |
117 |
Q |
| |
|
||||||||| |||||||| ||| || | |||||||| |||||||||||||| ||||| ||| || ||||| |||||||| || || ||| |||||| |
|
|
| T |
36009786 |
cacatctatagtcatcttttcaaaagattatgcttcttcaaaatggtgcttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaatt |
36009687 |
T |
|
| Q |
118 |
gtgatacctgtttt |
131 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36009686 |
gtgatacctgtttt |
36009673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 701
Target Start/End: Complemental strand, 23480111 - 23480061
Alignment:
| Q |
651 |
gaattttctttaggatttcacttcctagaaaaaatagactttaattgcatt |
701 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
23480111 |
gaattttcattaggatttcacttcctagaaaatttagacattaattacatt |
23480061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 696
Target Start/End: Complemental strand, 23448783 - 23448738
Alignment:
| Q |
651 |
gaattttctttaggatttcacttcctagaaaaaatagactttaatt |
696 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
23448783 |
gaattttctttaggatttcacttcctaaaaaaataagacattaatt |
23448738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 688
Target Start/End: Complemental strand, 23455501 - 23455468
Alignment:
| Q |
655 |
tttctttaggatttcacttcctagaaaaaataga |
688 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
23455501 |
tttctttaggatttcacttcgtagaaaaaataga |
23455468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 9733 - 10019
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
9733 |
catctattgtaatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacagatggt |
9832 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||| |||||||| || |||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9833 |
gatacctgttttttacaacttagatccagcaaatgtgagaaagcagactggaagttacgagcaagcctttgaaaaacataagcgagatttgaagagcaat |
9932 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
306 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
9933 |
aatgacaagttgaagaactggaaagccgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtaagtaaaa |
10019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 304 - 505
Target Start/End: Original strand, 10074 - 10275
Alignment:
| Q |
304 |
aaatcaataaactatttcctatcatttgaatgttttgtttctaatatagcacaattatttacttcataagtcttt-catctccatatttgtagttggaaa |
402 |
Q |
| |
|
|||||||||| |||| |||||| ||||| | |||| ||||||||||||||||||| ||||| || |||| ||| ||||||||||||||| ||||||| |
|
|
| T |
10074 |
aaatcaataagctatatcctatgatttgcaagtttgttttctaatatagcacaatttcttactacacaagttttttcatctccatatttgtgattggaaa |
10173 |
T |
|
| Q |
403 |
tgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccagaccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc |
502 |
Q |
| |
|
||||||||||||||||||| ||| | ||| |||||||||||||||||| ||| || |||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
10174 |
tgaacataaattttagaaaatgaaagctaaaaataattttagaaagtaaa-caggcccaattatttggagaagtaaacaatgatgttgatgtgcctggcc |
10272 |
T |
|
| Q |
503 |
ata |
505 |
Q |
| |
|
||| |
|
|
| T |
10273 |
ata |
10275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 3309 - 3437
Alignment:
| Q |
31 |
atcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttt |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |||||| || ||||||||||||| || || || |||||| |
|
|
| T |
3309 |
atcttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaatatatggaacagattgtaatgtctgttt |
3408 |
T |
|
| Q |
131 |
tttacaacatagatccatcacatgtgagg |
159 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |
|
|
| T |
3409 |
tttacgacatagatccatcgcatgtgagg |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 13607 - 13321
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
13607 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgt |
13508 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
13507 |
gatacctgttttttacaacatagatccagcaaatgtgaggaagcagactggaagttaccagcaagcctttgcaaaacataagcgagatttgaagcacaat |
13408 |
T |
|
| Q |
220 |
aatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
306 |
Q |
| |
|
|| || ||||| || |||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
13407 |
aacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaattataggtaagtaaaa |
13321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 304 - 528
Target Start/End: Complemental strand, 13266 - 13040
Alignment:
| Q |
304 |
aaatcaataaactatttcctatcatttgaatgttttgtttct-aatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaa |
402 |
Q |
| |
|
||||||||||||||| |||||| ||||| | ||||||||| | || |||||||||||||||||| ||| |||||||||||||| |||| | |||||||| |
|
|
| T |
13266 |
aaatcaataaactatatcctatgatttgcaagttttgttttttaacatagcacaattatttactacatgagtctttcatctccttattcatggttggaaa |
13167 |
T |
|
| Q |
403 |
tgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccagaccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc |
502 |
Q |
| |
|
|||||||| |||||| ||| ||| | ||| ||||||||||||||||| ||| || |||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
13166 |
tgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaa-caggccgaattatttggagaagtgaacaatgatgtttatgtgcctggcc |
13068 |
T |
|
| Q |
503 |
atagttg--aagaccttctgaaaactat |
528 |
Q |
| |
|
||||||| | ||||||||||||||||| |
|
|
| T |
13067 |
atagttgatatgaccttctgaaaactat |
13040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 701
Target Start/End: Complemental strand, 12929 - 12879
Alignment:
| Q |
651 |
gaattttctttaggatttcacttcctagaaaaaatagactttaattgcatt |
701 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| |
|
|
| T |
12929 |
gaattttctttaggatttcatttcctagaaaatttagacattaattacatt |
12879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 12894696 - 12894983
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatat-atggaacaaatcg |
118 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||| || ||||| ||| |||||||| ||||||||| || || ||||| ||||| | |
|
|
| T |
12894696 |
catctattgtcatcttctcaatagactatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatgga-caaattg |
12894794 |
T |
|
| Q |
119 |
tgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataaacgagatttgaagagcaa |
218 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||| || || ||||| |||| ||||||||||||||||| | | |||||||||| | |
|
|
| T |
12894795 |
tgatacctgttttttacgaaatagatccatcacatgtgaggaatcaaacagggaggtacagtcaagcctttgcaaaacacgagcaagatttgaagcacgg |
12894894 |
T |
|
| Q |
219 |
taatgacaagttacaggaatggaaagccgctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaat |
307 |
Q |
| |
|
|| || | |||||| ||||||||| ||||||| ||| ||||| ||||| | ||| ||| ||||||||||||| ||| || |||||| |
|
|
| T |
12894895 |
caaagatatgttacaaaaatggaaagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaat |
12894983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 14639021 - 14638965
Alignment:
| Q |
21 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagct |
77 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
14639021 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
14638965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 16124913 - 16124739
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| || |
|
|
| T |
16124913 |
catctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgt |
16124814 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
194 |
Q |
| |
|
|||||| |||| || | ||||||||||| |||||||| || |||| ||||||||| ||||||||||||||| |
|
|
| T |
16124813 |
gataccaattttctatgaaatagatccatctcatgtgagaaatcagattgggagttacgggcaagcctttgcaaa |
16124739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 16334738 - 16334912
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| || |
|
|
| T |
16334738 |
catctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgt |
16334837 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
194 |
Q |
| |
|
|||||| |||| || | ||||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| |
|
|
| T |
16334838 |
gataccaattttctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaa |
16334912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 16127066 - 16126928
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgt |
119 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| || |
|
|
| T |
16127066 |
catctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgt |
16126967 |
T |
|
| Q |
120 |
gatacctgttttttacaacatagatccatcacatgtgag |
158 |
Q |
| |
|
|||||| |||| || | ||||||||||| |||||||| |
|
|
| T |
16126966 |
gataccaattttctatgaaatagatccatctcatgtgag |
16126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 167623 - 167687
Alignment:
| Q |
20 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaag |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
167623 |
catctattgtcatcttctcagaaaactatgcttcctcataatggtgcttgaatgagatcaaaaag |
167687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 178271 - 178327
Alignment:
| Q |
21 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagct |
77 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
178271 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
178327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 6097933 - 6097902
Alignment:
| Q |
34 |
ttctcagaaaactatgcttcctcaaaatggtg |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6097933 |
ttctcagaaaactatgcttcctcaaaatggtg |
6097902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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