View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_50 (Length: 373)

Name: NF18674_low_50
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_50
NF18674_low_50
[»] chr3 (3 HSPs)
chr3 (6-358)||(249164-249502)
chr3 (17-164)||(19142271-19142418)
chr3 (87-164)||(38396758-38396835)
[»] chr2 (2 HSPs)
chr2 (23-171)||(5546317-5546465)
chr2 (131-164)||(25524908-25524941)
[»] chr6 (1 HSPs)
chr6 (83-164)||(5652927-5653008)
[»] chr4 (1 HSPs)
chr4 (83-185)||(45671438-45671540)
[»] chr7 (1 HSPs)
chr7 (83-185)||(5230008-5230110)
[»] chr5 (3 HSPs)
chr5 (17-171)||(20543502-20543656)
chr5 (116-153)||(13810992-13811029)
chr5 (116-153)||(13959677-13959714)
[»] chr8 (4 HSPs)
chr8 (104-185)||(12811923-12812004)
chr8 (87-164)||(34830906-34830983)
chr8 (29-162)||(36350223-36350356)
chr8 (94-163)||(27527480-27527549)
[»] chr1 (1 HSPs)
chr1 (102-165)||(46039606-46039669)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 358
Target Start/End: Complemental strand, 249502 - 249164
Alignment:
Q  6 agaagcataggatggggaggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaa 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249502 agaaacataagatggggaggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaa 249403  T
Q  106 gaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaatattcaaacaacaagtatgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249402 gaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaatattcaaacaacaagtatgtt 249303  T
Q  206 cnnnnnnnnnnnnattcattcattctgttatgcaattgttagttaatcattacattacattacattaattgttaccattaattgttcgtcattttgggta 305  Q
    |            ||| |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| |||||||    
T  249302 cttttttatttttatt-attcattctgttatgcaattgttagttaatcattacattacatta-------------cattaattgttcgtcatcttgggta 249217  T
Q  306 gatctattgaaattttgggcccgtgaactaggacagtgcccttgatatatata 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249216 gatctattgaaattttgggcccgtgaactaggacagtgcccttgatatatata 249164  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 19142418 - 19142271
Alignment:
Q  17 atggggaggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatg 116  Q
    ||||| || ||||| ||||| || || |||||||| || || || ||||||||||| |||||||||||  || | |||||| |  |||||||||||||||    
T  19142418 atgggaagaggaaaaattgaaatcaagaggattgaaaacactaccaataggcaagtcactttttgcaaacgacgcaatggattgttgaagaaagcttatg 19142319  T
Q  117 aactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 164  Q
    || |||| ||| | |||||||| |||||||||||  ||||||||||||    
T  19142318 aattatccgttctttgtgatgccgaagttgctcttgttgtcttctcca 19142271  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 38396758 - 38396835
Alignment:
Q  87 gaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 164  Q
    |||| ||||| ||| |||| |||||||||||||| || ||| | |||||||| || ||||||||||| ||||||||||    
T  38396758 gaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttctcca 38396835  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 5546317 - 5546465
Alignment:
Q  23 aggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactat 122  Q
    ||||||||||||||||| ||||||||||| || || || ||| | ||||| ||||| ||||| ||||| |||||  |  |||||||||| |||||| |||    
T  5546317 aggggaaagattgagatcaaaaggattgaaaacacgacgaatcgtcaagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattat 5546416  T
Q  123 cagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtgg 171  Q
    | ||| | |||||||| ||||||||||| || |||||||| ||||||||    
T  5546417 ctgttctttgtgatgcagaagttgctcttatagtcttctctagccgtgg 5546465  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 25524908 - 25524941
Alignment:
Q  131 tgtgatgctgaagttgctctcattgtcttctcca 164  Q
    |||||||||||||||||||| |||||||||||||    
T  25524908 tgtgatgctgaagttgctcttattgtcttctcca 25524941  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 5652927 - 5653008
Alignment:
Q  83 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 164  Q
    |||||||| ||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||||| ||| |||||||||    
T  5652927 aagagaagaaatggacttcttaagaaagcttatgaattatctgttctttgtgatgctgaagttgctcttattatcttctcca 5653008  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 45671438 - 45671540
Alignment:
Q  83 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatg 182  Q
    |||||||| |||||  | || ||||| ||||||||||| |||||| | |||||||||||||||||||| ||  ||||||||| |||||||| ||| ||||    
T  45671438 aagagaagaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatg 45671537  T
Q  183 aat 185  Q
    |||    
T  45671538 aat 45671540  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 5230008 - 5230110
Alignment:
Q  83 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatg 182  Q
    |||||||| ||||| ||||| ||||||||||||||||| || ||| | ||||||||||| |||||||| ||  |||||||||  ||||| |  |||||||    
T  5230008 aagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatg 5230107  T
Q  183 aat 185  Q
    |||    
T  5230108 aat 5230110  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 20543656 - 20543502
Alignment:
Q  17 atggggaggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatg 116  Q
    ||||| ||||||||| | ||| |||| ||||||||||| | || |||| | ||||| || |||   |||||||| |||||| | |||||||| |||||||    
T  20543656 atgggtaggggaaaggtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttatg 20543557  T
Q  117 aactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtgg 171  Q
    |||| ||  |  | ||||||||||| |||||||||||| | ||||| ||||||||    
T  20543556 aactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtgg 20543502  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 13811029 - 13810992
Alignment:
Q  116 gaactatcagttttgtgtgatgctgaagttgctctcat 153  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13811029 gaactttcagttttgtgtgatgctgatgttgctctcat 13810992  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 13959677 - 13959714
Alignment:
Q  116 gaactatcagttttgtgtgatgctgaagttgctctcat 153  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13959677 gaactttcagttttgtgtgatgctgatgttgctctcat 13959714  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 12812004 - 12811923
Alignment:
Q  104 aagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaat 185  Q
    ||||||||||||||||| || ||| | ||||||||||||||||| || ||  | ||||| |||||||||| ||| |||||||    
T  12812004 aagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 12811923  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 34830983 - 34830906
Alignment:
Q  87 gaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 164  Q
    ||||||| || ||| |||| |||||||||||||| || ||| | |||||||||||||||||||| ||  |||||||||    
T  34830983 gaaggaacggtcttttgaaaaaagcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctcca 34830906  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 36350223 - 36350356
Alignment:
Q  29 aagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatcagttt 128  Q
    ||||||||||| || ||||||||||| ||||| ||| | ||||| || || |||||| | || |||||  | || ||||| || |||||| |||| ||      
T  36350223 aagattgagatcaagaggattgagaacacaacgaatcgtcaagttacgttctgcaagcgtagaaatggcttgcttaagaaggcatatgaattatctgtgc 36350322  T
Q  129 tgtgtgatgctgaagttgctctcattgtcttctc 162  Q
    | |||||||||||||||||||| || ||||||||    
T  36350323 tttgtgatgctgaagttgctcttatagtcttctc 36350356  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 27527549 - 27527480
Alignment:
Q  94 tggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcc 163  Q
    ||||||||| ||||||||| ||||  | || ||| | |||||||||||||||||| | ||||||||||||    
T  27527549 tggacttctcaagaaagctcatgagatctctgttctttgtgatgctgaagttgctttgattgtcttctcc 27527480  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 46039669 - 46039606
Alignment:
Q  102 tgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccag 165  Q
    |||||||||||| |||||| || || || |||||||||||||||||||| ||  ||||||||||    
T  46039669 tgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccag 46039606  T

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