View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_52 (Length: 365)
Name: NF18674_low_52
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 6539934 - 6539613
Alignment:
| Q |
18 |
gagtagtggtttcttcatctcctacttctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539934 |
gagtagtggtttcttcatctcctacttctatctcactacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaa |
6539835 |
T |
|
| Q |
118 |
aatatcacatcatcaaactctcttaaacacaactgtcatatataatcacttaataactctttaccatatgtgtcagctcaaccagaagagtttgactttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6539834 |
aatatcacatcatcaaactctcttaaacacaactgtcatatataatcacttaataactctttaccatatgtgtcagctcaacgagaagagtttgactttc |
6539735 |
T |
|
| Q |
218 |
taaatttaacaggcacagatcaaataccacagttgtaaaatgattatcagtgactcttaattaatgataatttctacattcctcaatatctccctcttca |
317 |
Q |
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| T |
6539734 |
taaatttaacagg--------------catagttgtaaaatgattattagtgactcttaattaatgataatttctacattcctcaatatctccctcttca |
6539649 |
T |
|
| Q |
318 |
acaatacattaattacattccgcaggagcactttca |
353 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
6539648 |
acaaaacattaattacattccgcaggagcactttca |
6539613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 11784379 - 11784235
Alignment:
| Q |
16 |
cagagtagtggtttcttcatctcctact-tctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatat |
114 |
Q |
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| T |
11784379 |
cagagttgtggtttcttcatctcctagtctctgtctcaatactttcttgacattcttcaaataagtcaattgtgtctttagatctgtcacctggaaatat |
11784280 |
T |
|
| Q |
115 |
caaaatatcacatcatcaaactctcttaaacacaactgtcatatata |
161 |
Q |
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| ||| | || ||||||||| |||| | |||||| ||||||||||| |
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| T |
11784279 |
ccaaacaccatatcatcaaaatctc--atacacaaatgtcatatata |
11784235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 11778962 - 11778863
Alignment:
| Q |
16 |
cagagtagtggtttcttcatctcctact-tctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatat |
114 |
Q |
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|||||| ||||||||||||||||||| | ||| ||||| ||| || ||||||||||| |||||| |||||| ||||||| |||||||||| || ||||| |
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| T |
11778962 |
cagagttgtggtttcttcatctcctagtctctgtctcaatactttcttgacattcttgaaataattcaattgtgtctttagatctatcacctggtaatat |
11778863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 11770732 - 11770613
Alignment:
| Q |
23 |
gtggtttcttcatctcctacttctatc-tcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaata |
121 |
Q |
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||||||||||||||||||| || | | | ||||| || ||||||||||| |||||| |||||| |||| || |||||||||| |||||||| ||| | |
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| T |
11770732 |
gtggtttcttcatctcctaatttttgccttagtacgttcttgacattcttgaaataagtcaattgtgtctctagatctatcacctggaaatatataaaca |
11770633 |
T |
|
| Q |
122 |
tcacatcatcaaactctctt |
141 |
Q |
| |
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|| |||||||||||||||| |
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| T |
11770632 |
ccatatcatcaaactctctt |
11770613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 11764502 - 11764435
Alignment:
| Q |
64 |
acattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatcacatcatc |
131 |
Q |
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|||||||| |||||| |||||||||||||| |||| ||||| | |||||||||||| ||| |||||| |
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| T |
11764502 |
acattcttgaaataagtcaattgagtctttagatctttcacctgaaaatatcaaaatttcatatcatc |
11764435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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