View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_53 (Length: 360)
Name: NF18674_low_53
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_53 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 9873752 - 9874107
Alignment:
| Q |
9 |
gagatgaaggagaaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatc |
108 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||| |
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| T |
9873752 |
gagaagaaggagaaataagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccgaaagaggaaaaaaaaata-aaatc |
9873850 |
T |
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| Q |
109 |
attttcattcctttgaattcgatggaaaccaacacacactggtaagtatatatatc------aacttttctttttcttcgcattcggagccaaactcctg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9873851 |
attttcattcctttgaattcgatggaaaccaacacacacttgtaagtatatatatatatatgaacttttctttttcttcgcattcggagccaaactcctg |
9873950 |
T |
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| Q |
203 |
aacatacatttcaaaaatgatatatataattacaagtgagagaggagatttcaaactcattttcaaagttattcatatacaattgtattcattatatgtt |
302 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
9873951 |
aacatgcatttcaaaaatgatatatatacttacaagtgagagaggatttttcaaactcattttcaaagttattcatcaacaatt-tattcattatatgtt |
9874049 |
T |
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| Q |
303 |
tacaattgcaaaaaatatgaactgattaaaatatcatcaacgtaagaagtttactaac |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9874050 |
tacaattgcaaaaaatatgaactgattaaaatatcatcaacgtaagaagtttactaac |
9874107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 9866482 - 9866322
Alignment:
| Q |
155 |
tatatatatcaacttttctttttcttcgcattcggagccaaactcctgaacatacatttcaaaaatgatatatataattacaagtgagagaggagatttc |
254 |
Q |
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| T |
9866482 |
tatatatatcaatttttcttgttctccgcattcggagccaaactcctgaacatacattccaaaaatgatatatatacttacaagtgagagaggagatttg |
9866383 |
T |
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| Q |
255 |
aaactcattttcaaagttattcatatacaattgtattcattatatgtttacaattgcaaaa |
315 |
Q |
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| T |
9866382 |
aaactcattttcaaagttattcatctacaattgtattgattatatgtttacaattgcaaaa |
9866322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 9866673 - 9866524
Alignment:
| Q |
14 |
gaaggagaaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcatttt |
113 |
Q |
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| T |
9866673 |
gaaggagaaagaagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggataaaacagaataaatcatttt |
9866574 |
T |
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| Q |
114 |
cattcctttgaattcgatggaaaccaacacacactggtaagtatatatat |
163 |
Q |
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| T |
9866573 |
cattcctttgaattcaatggaaaccagcacacacttgtaaatatatatat |
9866524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 9886776 - 9886903
Alignment:
| Q |
9 |
gagatgaaggagaaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatc |
108 |
Q |
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|||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9886776 |
gagaagaaggagaaagaagaagaggagccaccattggtggatgctaaacccattgacgaaccggttagaaattccggaagaggaaaaaacagaataaatc |
9886875 |
T |
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| Q |
109 |
attttcattcctttgaattcgatggaaa |
136 |
Q |
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| T |
9886876 |
attttcattcctttcaattcgatggaaa |
9886903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 9867136 - 9867319
Alignment:
| Q |
15 |
aaggagaaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaat--cattt |
112 |
Q |
| |
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|||||||||||||||||| | |||| ||||||||||||||||||||||| || || |||||| |||||||| ||||||| ||||||||| ||||| |
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| T |
9867136 |
aaggagaaagaagaagagcatccgccattggaggatgctaaacccattggcgc-cctgttagggtttccggaatgggaaaaat-agaataaatatcattt |
9867233 |
T |
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| Q |
113 |
tcattcctttgaattcgatggaaaccaacacacactggtaagtatatatatcaacttttctttttcttcgcattcggagccaaact |
198 |
Q |
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| T |
9867234 |
tcattcctttcaattcgatgaaaaccaatacacacttgtaagtatatatatcaatctttcttgttctctgcattccgagccaaact |
9867319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 9873299 - 9873181
Alignment:
| Q |
21 |
aaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcct |
120 |
Q |
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|||||||||||| ||| || |||| || ||| ||||||||||| |||| | |||||| |||||||| |||||||| || |||||||||||||||||| | |
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| T |
9873299 |
aaagaagaagagcagctgccattgaagaatgttaaacccattggcgaaacagttagggtttccggaataggaaaaa-caaaataaatcattttcattctt |
9873201 |
T |
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| Q |
121 |
ttgaattcgatggaaaccaa |
140 |
Q |
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|| |||||||| |||||||| |
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| T |
9873200 |
ttaaattcgatagaaaccaa |
9873181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 9874303 - 9874354
Alignment:
| Q |
264 |
ttcaaagttattcatatacaattgtattcattatatgtttacaattgcaaaa |
315 |
Q |
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|||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
9874303 |
ttcaaagtcattcatctacaattgtattgattatatgtttacaattgcaaaa |
9874354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 9886342 - 9886227
Alignment:
| Q |
16 |
aggagaaagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataa---atcattt |
112 |
Q |
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|||||||||||||| || |||||| |||| | |||| ||||||| ||| |||||| |||||| |||||| | ||| ||||| ||||||| ||||||| |
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| T |
9886342 |
aggagaaagaagaacagcagccgccattgcaagatgttaaaccctttggcgaacctgttagggtttccggtatagg-aaaaatagaataaatgatcattt |
9886244 |
T |
|
| Q |
113 |
tcattcctttgaattcg |
129 |
Q |
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|||||||||| |||||| |
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| T |
9886243 |
tcattcctttaaattcg |
9886227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 40956613 - 40956750
Alignment:
| Q |
22 |
aagaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctt |
121 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| | |||| |||||| |||| ||||||||||||||| ||| ||||||||||||||||| |
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| T |
40956613 |
aagaagaagaggagccgcctttggaggatgctaaacccattggcaaaccagttagggtttccagaagaggaaaaaacaaaatcaatcattttcattcctt |
40956712 |
T |
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| Q |
122 |
tgaattcgatggaaaccaacacacactggtaagtatat |
159 |
Q |
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|||||| ||||||||||| ||||||| |||||||||| |
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| T |
40956713 |
tgaatttgatggaaaccagtacacacttgtaagtatat |
40956750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 40943704 - 40943793
Alignment:
| Q |
51 |
gctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttgaattcgatggaaaccaa |
140 |
Q |
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||||||||||||| ||||| |||||| ||| |||| ||||| | ||||| |||||||||||| |||||||| ||||||||| ||||| |
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| T |
40943704 |
gctaaacccattggtgaacccgttaggttttctggaaaaggaagaggcagaaaaaatcattttcagtcctttgacttcgatggagaccaa |
40943793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 46522070 - 46522030
Alignment:
| Q |
181 |
cgcattcggagccaaactcctgaacatacatttcaaaaatg |
221 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
46522070 |
cgcattcagagccaaactcctggacatacattccaaaaatg |
46522030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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