View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_6 (Length: 705)

Name: NF18674_low_6
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_6
NF18674_low_6
[»] scaffold0191 (1 HSPs)
scaffold0191 (60-608)||(20011-20565)
[»] chr6 (5 HSPs)
chr6 (60-162)||(10440297-10440399)
chr6 (390-455)||(10440542-10440607)
chr6 (619-688)||(27712040-27712108)
chr6 (255-295)||(10440426-10440466)
chr6 (293-338)||(10440501-10440544)
[»] chr5 (2 HSPs)
chr5 (615-691)||(28697248-28697323)
chr5 (615-691)||(28699515-28699590)
[»] chr2 (1 HSPs)
chr2 (615-691)||(28180305-28180380)
[»] chr4 (1 HSPs)
chr4 (615-691)||(6677895-6677970)
[»] chr3 (1 HSPs)
chr3 (615-691)||(33715745-33715820)
[»] chr7 (1 HSPs)
chr7 (615-691)||(628279-628356)


Alignment Details
Target: scaffold0191 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 60 - 608
Target Start/End: Complemental strand, 20565 - 20011
Alignment:
Q  60 agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctc--------acctt 151  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||        |||||    
T  20565 agattctgaaaatatttctattctcaaatttcacccatcatagattcaaagttaagccaagactatatcaattctaaaggtcctctcttgttctcacctt 20466  T
Q  152 ttcttcaaataacattagacccatttcgatcaaatgtcattttgttctatataaaatgtaaaatttacattggaagtacaaaagtaaatgatgttgacac 251  Q
    ||| |||| |||||||| |||||||||||||||||||  ||   |||||||||||||| |||||| ||||||||||||||||| |||| |||||||||||    
T  20465 ttcgtcaagtaacattacacccatttcgatcaaatgt--ttgcattctatataaaatgcaaaattcacattggaagtacaaaaataaaagatgttgacac 20368  T
Q  252 caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatgtctccatgataca 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20367 caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatctctccatgataca 20268  T
Q  352 aatatccatagtccaacgttactaatttgatgagacctatgaaatgattgttcattcaatacataaaaagatacggttagaaagatatatttaccgtcat 451  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  20267 aatatccatagtccaatgttactaatttgatgagacctatgaaatgattgttcattcaatacatgcaaagatacggttagaaagatatatttaccgtcat 20168  T
Q  452 taaataacaattcatacttaaacgaaagattannnnnnngagtgatccgctgaagattctctaaagatcatttgggtttgcaaaccattcaaacaaacca 551  Q
    |||||||||| ||||||||||||| |||||||       |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  20167 taaataacaagtcatacttaaacggaagattattcttttgagtgatccgctgaagattccctaaagatcatttgggtctgcaaaccattcaaacaaacca 20068  T
Q  552 aaattgaatattatgttaatgaacaggttactacttagaatcatagtatcatcgaga 608  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||||||| ||||    
T  20067 aaattgaatactatgttaatgaataagtaactacttagaatcatagtatcattgaga 20011  T

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Target: chr6 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 10440297 - 10440399
Alignment:
Q  60 agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctcaccttttcttcaa 159  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10440297 agattctaaaaatatttctattctcaaatttcacccatcatagattcaaaattaagccaagactatatcaattctaaaggtcctctcaccttttcttcaa 10440396  T
Q  160 ata 162  Q
    |||    
T  10440397 ata 10440399  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 10440542 - 10440607
Alignment:
Q  390 atgaaatgattgttcattcaatacataaaaagatacggttagaaagatatatttaccgtcattaaa 455  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10440542 atgaaatgattgttcattcaatacatgaaaagatacggttagaaagatatatttaccgtcattaaa 10440607  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 619 - 688
Target Start/End: Original strand, 27712040 - 27712108
Alignment:
Q  619 gactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttatt 688  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27712040 gactggatgactatgaaactact-gttttaagttcctaaattttaggatctattatctttttatgttatt 27712108  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 10440426 - 10440466
Alignment:
Q  255 caaaaaatatgaaccgatctaatcaacatcctctattatca 295  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10440426 caaaaaatatgaaccgatctaatcaacatcctctattatca 10440466  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 10440501 - 10440544
Alignment:
Q  293 tcatgcttcatgattcctgtacaacaatcaaacacaacattcaatg 338  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  10440501 tcatgcttcatgattcctgtacaacaatcaa--acaacattcaatg 10440544  T

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Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 28697323 - 28697248
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgtt 691  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28697323 tgttgactggatgactatgaaactact-gttttaagttcctaatttttaggatctattatctttttatgttattgtt 28697248  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 28699590 - 28699515
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgtt 691  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28699590 tgttgactggatgactatgaaaccacta-ttttaagttcctaatctttaggatctattatctttttatgttattgtt 28699515  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 615 - 691
Target Start/End: Original strand, 28180305 - 28180380
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgtt 691  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  28180305 tgttgactggatgactatgaaactact-gatttaagttcctaatttttaggatctattatctttttatgttattgtt 28180380  T

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Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 6677970 - 6677895
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgtt 691  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6677970 tgttgactggatgagtatggaactact-gttttaagttcctaatttttaggatctattatctttttatgttattgtt 6677895  T

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Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 33715820 - 33715745
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgtt 691  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33715820 tgttgactagatgactatgaaactact-gttttaagttcctaatttgtaggatctattatctttttatgttattgtt 33715745  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 691
Target Start/End: Original strand, 628279 - 628356
Alignment:
Q  615 tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatct-attatc-tttttatgttattgtt 691  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  628279 tgttgactggatgactatgaaactacg-gttttaagttcctaatttttaggatctaagtatcttttttatgttattgtt 628356  T

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