View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_61 (Length: 345)
Name: NF18674_low_61
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_61 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 3973502 - 3973857
Alignment:
| Q |
1 |
caaaccccgaccaccacnnnnnnntaatggcgaggatccatagtcatttggatcccagaacgtttaaagagttacaaatagtcgataaatttacgaaatt |
100 |
Q |
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| T |
3973502 |
caaaccccgaccaccacaaaaaaataatggcgaggatccatagtagtttggatcccagaacgtttaaagagttacaaatagtccataaatttacgaaatt |
3973601 |
T |
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| Q |
101 |
ttaaaataatattcgattgtgcactttgatcaaa------------tagtggagtataggttgttgttactaactgttgcattggaggttaatattgatg |
188 |
Q |
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| T |
3973602 |
ttaaaataatattcgattgtgcactttgatcaaaatagtaccaggttagtggagtataggttgttgttactaactgttgcattgcaggttaatattgatg |
3973701 |
T |
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| Q |
189 |
atgtctagtcttgggtgtcgaatgcagtaccaggttataaggtctgtggtgcttaccactctctgttggctgactttgcatcccatgccttctgctcctt |
288 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
3973702 |
atgtctagtcttgggtttcgaatgcagtaccaggttataaggtccgtggtgcttaccactctctgttggccgactttgcat-ccatgccttttgctcctt |
3973800 |
T |
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| Q |
289 |
tagttgatgagcctaccatttggaggaaaaatgtaccggttaaagtttcagtatttg |
345 |
Q |
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| T |
3973801 |
tagttgatgcgcctaacatttggaggaaaaatgtaccgcttaaagtttcagtttttg |
3973857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 345
Target Start/End: Complemental strand, 9084306 - 9084097
Alignment:
| Q |
135 |
tagtggagtataggttgttgttactaactgttgcattggaggttaatattgatgatgtctagtcttgggtgtcgaatgcagtaccaggttataaggtctg |
234 |
Q |
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||||||||| || ||||||||||||| ||||| ||| ||||||||||| ||||||||| || |||| | | || |||| || |||||| ||| | |
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| T |
9084306 |
tagtggagtgtacattgttgttactaattgttgtgttgcaggttaatattaatgatgtcttgtattggattcctgatttagtagcaagttatacggtgcg |
9084207 |
T |
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| Q |
235 |
tggtgcttaccactctctgttggctgactttgcatcccatgccttctgctcctttagttgatgagcctaccatttggaggaaaaatgtaccggttaaagt |
334 |
Q |
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||||| |||||| |||||||||||||| |||||| |||||||||||||| | | || | || ||||| ||| |||||| ||||||| | | ||||||| |
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| T |
9084206 |
tggtgtttaccattctctgttggctgagtttgca-accatgccttctgctacatcagcttctgcgcctagcatctggaggtaaaatgtcctgcttaaagt |
9084108 |
T |
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| Q |
335 |
ttcagtatttg |
345 |
Q |
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|||||| |||| |
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| T |
9084107 |
ttcagtctttg |
9084097 |
T |
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