View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_63 (Length: 343)
Name: NF18674_low_63
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 41729198 - 41729511
Alignment:
| Q |
13 |
catcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggatgcctatcgccatgagccttaccggtccc |
112 |
Q |
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| T |
41729198 |
catcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggatgcctatcgccatgagccttaccggtccc |
41729297 |
T |
|
| Q |
113 |
tcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagttgcatgatcaagcaaaatcccacttcca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729298 |
tcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagttgcatgatcaagcaaaatcccacttcca |
41729397 |
T |
|
| Q |
213 |
atcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatcataacacccaaaatcttccttccatttgaccacaaattatgag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41729398 |
atcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatcataacagccaaaatcttccttccatttgaccacaaattatgag |
41729497 |
T |
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| Q |
313 |
ctaccctatgagct |
326 |
Q |
| |
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|||||||||||||| |
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| T |
41729498 |
ctaccctatgagct |
41729511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 23158293 - 23158550
Alignment:
| Q |
13 |
catcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggatgcctatcgccatgagccttaccggtccc |
112 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| || || | || || ||||||||||| ||||| ||||| ||| | | ||||| || || |
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| T |
23158293 |
catcaccaatcttaatattccctaaaatacatgttccagcaccaatcaaaacaccatcaccaatcttaggatgtctatcaccacaaactttaccagttcc |
23158392 |
T |
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| Q |
113 |
tcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagttgcatgatcaagcaaaatcccacttcca |
212 |
Q |
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|| || || ||| |||||||| | |||| |||||||| ||||||||||||||||| |||| || ||||||||||| | ||||||||| || ||| |
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| T |
23158393 |
acctaatgtaacattatgcaaaattgcaacattatttccaaccacagcagtttcaccaacaacaagacctgttgcatgatccaacaaaatccctctacca |
23158492 |
T |
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| Q |
213 |
atcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatca |
270 |
Q |
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|||||||| |||||||||||||||||| ||||||| || ||||| | ||| ||||||| |
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| T |
23158493 |
atcttagcaccaggatgaatatcaactgcaaaaacctcagaaaccctattttgaatca |
23158550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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